RNA id: CI01000054_06210877_06211356.mRNA


Basic Information

Item Value
RNA id CI01000054_06210877_06211356.mRNA
length 669
RNA type mRNA
GC content 0.45
exon number 1
gene id CI01000054_06210877_06211356
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 6210807 ~ 6211475 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACAGAATATTTGTCAACGGCTGTTAGTGTTCAAGGACAAGAATAAACGCTAAAGTTTATTTAAAAAACTGTTGAGGTCAGAAGAGCCTTGCAAACTTTGCAAGGGTGCCATCCAAAAGCATGGAGAGACCTGATGTTAAGCCCAGCCGCTCTAAGTTTCTCCCAAGGCTATGCACCATAAAACGTGGACCTTTTGGTCACCTTCATGCCATCACCGGAACAACTGACCTCAGGCTCAACCACTTTTCCAGAGACCTTCAAAACTCAGGACTAAACGCTTGTTTTATCCAAACTGTAACGGCAACAGAAGTGGTTTGTGGGATTAAAAGGTATAAGTGCTCAGGATGTCTGTGCTACTACAATGAGCTGGAGCAGCTGATGGCACACATAAAGCAGGGCTGGATAGAAGGCTACAGCTGCAAAGCGTTCTACCGTAAGCTGAAGGACATGCAGGACTGCAGGGAGTTACTGACCATATATGAAGAAGAAGCTGCTTCTGAAAGCAACCCTCGGCTTAGTGCCTCCTCGAGTCTGAGGCAGAGCACCAAAGACGAGAAGCTGGACATGGTCCTCAGGTGGCTGCAGGACATAACAATATAACTACAGTGAATGAAGGAGATAGATTGATTGTCTGAAGTCATGTCAAGTTGTTGGCAAGGATTTAATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU264836 lncRNA downstream 358100 5782960 ~ 5852707 (-) False G233392
TU264830 lncRNA downstream 386681 5821477 ~ 5824126 (-) True G233390
TU264838 lncRNA downstream 420697 5782960 ~ 5790110 (-) True G233392
TU264840 lncRNA downstream 427534 5760299 ~ 5783273 (-) False G233392
TU264872 lncRNA downstream 459529 5750346 ~ 5751278 (-) True G233420
TU264878 lncRNA upstream 69069 6280544 ~ 6286767 (-) True CI01000054_06283619_06286512
TU264992 lncRNA upstream 105846 6317321 ~ 6325541 (-) True G233539
TU265045 lncRNA upstream 201608 6413083 ~ 6413708 (-) True G233581
TU265049 lncRNA upstream 207130 6418605 ~ 6418858 (-) True G233585
TU265059 lncRNA upstream 211306 6422781 ~ 6423081 (-) True G233590
CI01000054_05990266_06191955.mRNA mRNA downstream 18852 5990266 ~ 6191955 (-) True CI01000054_05990266_06191955
CI01000054_05956278_05957354.mRNA mRNA downstream 253453 5956113 ~ 5957354 (-) True CI01000054_05956278_05957354
CI01000054_05853193_05858118.mRNA mRNA downstream 352689 5853075 ~ 5858118 (-) True CI01000054_05853193_05858118
CI01000054_05827691_05828736.mRNA mRNA downstream 380090 5827393 ~ 5830717 (-) True CI01000054_05827691_05828736
CI01000054_05822181_05823458.mRNA mRNA downstream 387123 5822168 ~ 5823684 (-) False CI01000054_05822181_05823458
CI01000054_06222549_06234979.mRNA mRNA upstream 10992 6222467 ~ 6235072 (-) True CI01000054_06222549_06234979
CI01000054_06242813_06258348.mRNA mRNA upstream 31266 6242741 ~ 6258348 (-) True CI01000054_06242813_06258348
CI01000054_06283619_06286512.mRNA mRNA upstream 71844 6283319 ~ 6286676 (-) False CI01000054_06283619_06286512
CI01000054_06321499_06337371.mRNA mRNA upstream 109794 6321269 ~ 6337767 (-) True CI01000054_06321499_06337371
CI01000054_06422150_06433402.mRNA mRNA upstream 210333 6421808 ~ 6433689 (-) True CI01000054_06422150_06433402
TU263564 other downstream 1001567 5206199 ~ 5209240 (-) True G232274
TU263226 other downstream 1538574 4672197 ~ 4672233 (-) True G231958
TU263225 other downstream 1538574 4672197 ~ 4672233 (-) True G231958
TU262888 other downstream 2227984 3981847 ~ 3982823 (-) True G231645
TU262068 other downstream 3147464 3057648 ~ 3063343 (-) True G230908
TU265088 other upstream 416607 6649149 ~ 6654013 (-) True G233619
TU265381 other upstream 953960 7171325 ~ 7171673 (-) True G233891
TU266788 other upstream 3036564 9248039 ~ 9248538 (-) True G235216
TU266868 other upstream 3271672 9485215 ~ 9485318 (-) False G235290
TU266867 other upstream 3271877 9485215 ~ 9485318 (-) False G235290

Expression Profile