RNA id: CI01000054_06321499_06337371.mRNA


Basic Information

Item Value
RNA id CI01000054_06321499_06337371.mRNA
length 977
RNA type mRNA
GC content 0.39
exon number 3
gene id CI01000054_06321499_06337371
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 6321269 ~ 6337767 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGCAGCCCACCCTTAAATCTGAGGCATCATTGATGTCTATCGCACAAACGTTGTGGGATAAGTTACATGCAAAAGTTTATTCCTCAGGGTTAAGGCTTTGTTCAAATCACAAAAGAATTAGTAATTCGCAATAGTGATGCTAGCTGTAGAATACACAAATAGTATATTAATAATTTAGCAAGAAGATTTAGCAGTCATTAGGAACCACAGGAGAAGCTCGTTATCTCTTAACATCTGCAATGCATTTGGACAGTTCCCAGAATAGCCATCCAAAACACAATATCTGTGATTAAGCAATTGTGGAAGTAAAACAAAAGAGGTTTCCAAGTCGGTTTTATGTAAACTTACAAAAGAAAAGGGAAGTGGAAGAACTTGTTTCCCCTAGCATATAAATAAATGGGAGGATGGATCCACCATCATCAAGGCTCTATTCGTGTCTGTCGAGATCATTTTCACATAACAACTTCTGATGCCATTGGCTTTTTCAAATTTGCATGGGTAAGTGAGATAGTTTCTCTATACGTCCACACCGGTGATGCACTCGAAGAAGAGATGTTTGTCACCAAAATAAGACAAAGCCAAAACATCTCGCATATTTTGGTGAAAGCACGCTACATGCCGCATAACATACACTGGACATGCTTACGTTTTAAGACCAAGAGCGCGTGCATGCAATCTGAAGTACCAATGGGGCAAGACGCTGAGCTCACACTTGCCTCGAGACACAAAAGTGACTCAACGACATGAGGATAAAGACTGTCACTGCAACAAAACACATTCTCATCTGGACTCCACAAGACCCGCCCACATGCATCAAAGTCAAGGAAATATATGCATGAAAAAAATGATGAGTTTGAGCTTCTGATAGTTTTTTCAAATGAAAAAGAAGGAATTATTTCTTTCCCAGAGGGCATGGAAGTCTCTACTACTTACAGATGTCATTTCTTCCTCAATTTTTCACAGCTCTTCAGAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU264878 lncRNA downstream 34502 6280544 ~ 6286767 (-) True CI01000054_06283619_06286512
TU264836 lncRNA downstream 468562 5782960 ~ 5852707 (-) False G233392
TU264830 lncRNA downstream 497143 5821477 ~ 5824126 (-) True G233390
TU264838 lncRNA downstream 531159 5782960 ~ 5790110 (-) True G233392
TU264840 lncRNA downstream 537996 5760299 ~ 5783273 (-) False G233392
TU265045 lncRNA upstream 75316 6413083 ~ 6413708 (-) True G233581
TU265049 lncRNA upstream 80838 6418605 ~ 6418858 (-) True G233585
TU265059 lncRNA upstream 85014 6422781 ~ 6423081 (-) True G233590
TU265055 lncRNA upstream 96981 6434748 ~ 6436431 (-) True G233588
TU265061 lncRNA upstream 99935 6437702 ~ 6437903 (-) True G233592
CI01000054_06283619_06286512.mRNA mRNA downstream 34593 6283319 ~ 6286676 (-) False CI01000054_06283619_06286512
CI01000054_06242813_06258348.mRNA mRNA downstream 62921 6242741 ~ 6258348 (-) True CI01000054_06242813_06258348
CI01000054_06222549_06234979.mRNA mRNA downstream 86197 6222467 ~ 6235072 (-) True CI01000054_06222549_06234979
CI01000054_06210877_06211356.mRNA mRNA downstream 109794 6210807 ~ 6211475 (-) True CI01000054_06210877_06211356
CI01000054_05990266_06191955.mRNA mRNA downstream 129314 5990266 ~ 6191955 (-) True CI01000054_05990266_06191955
CI01000054_06422150_06433402.mRNA mRNA upstream 84041 6421808 ~ 6433689 (-) True CI01000054_06422150_06433402
CI01000054_06469564_06492881.mRNA mRNA upstream 131085 6468852 ~ 6492881 (-) True CI01000054_06469564_06492881
CI01000054_06503408_06508723.mRNA mRNA upstream 165466 6503233 ~ 6510068 (-) True CI01000054_06503408_06508723
CI01000054_06629482_06641861.mRNA mRNA upstream 291538 6629305 ~ 6642160 (-) False CI01000054_06629482_06641861
CI01000054_06830485_06831336.mRNA mRNA upstream 491225 6828992 ~ 6831336 (-) True CI01000054_06830485_06831336
TU263564 other downstream 1112029 5206199 ~ 5209240 (-) True G232274
TU263226 other downstream 1649036 4672197 ~ 4672233 (-) True G231958
TU263225 other downstream 1649036 4672197 ~ 4672233 (-) True G231958
TU262888 other downstream 2338446 3981847 ~ 3982823 (-) True G231645
TU262068 other downstream 3257926 3057648 ~ 3063343 (-) True G230908
TU265088 other upstream 290315 6649149 ~ 6654013 (-) True G233619
TU265381 other upstream 827668 7171325 ~ 7171673 (-) True G233891
TU266788 other upstream 2910272 9248039 ~ 9248538 (-) True G235216
TU266868 other upstream 3145380 9485215 ~ 9485318 (-) False G235290
TU266867 other upstream 3145585 9485215 ~ 9485318 (-) False G235290

Expression Profile