RNA id: TU265098



Basic Information


Item Value
RNA id TU265098
length 1329
lncRNA type sense_over
GC content 0.32
exon number 1
gene id CI01000054_06946694_06947533
representative True

Chromosome Information


Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 6944557 ~ 6947680 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CGAACCGCTGATCCATAACGCTCCGAAGCTTCCTGAAGCAATGTTTTGAAATCGGCCATCACTATATAAGTCGTTATTTTGTTTTTTTGGCGCACCAAAAATATTCTCGTTGCTTTATAATATTAATATTGAACCACTGTACTCACATGAACTGATTTAAATATGTTTTTAGTACATTAATGGATCTTGAGAGAGGAAATGTCATTGCTGGCTATGGAGGCCTCACTGAGCCATCGGATTTCAACAAAAATATCTTAATTTGTGTTCCGAAGATTAATGAAGGTCTTACGGGTTTGGAACGGCATGAGGGTGAGTAATAAATGACATTATTTTTATTTTTGGGTGAACTAACCCTTTAATATTATGAACCTCTTTCTGAATCTTGTCATAATTTTATTCTGTTCTTGTAAATATACATTTACTGGAAATTACACAGTATTTGTTTATTTTATATTTACTAGTAATTCAGTAATTCAGCAGTTTATTTTTTATTTTAGAAATAAAGTTGCATTTTTTGCCTTTGACGTCGAGAATAACAGACCCACTTAAGTTACAGGCATTTTATACGGCCAGCTATAAATGCTGTAAAATAACCACTAGATGGAGCTGTTTATTTTATATGAACAGACTATTGCTGTGTTTTGGACATTCAGTGTAACGTTAAAATGAAATATAAGCTTTTTAAAACGTCAGACACTGTACATGGTTTTACAGATCTTAATGCTGCATCACCAAACTGATGATAAACATTGATGTTAGACAATCTAAAATAAGAAAGATAAGGGAGTTGTTTAAAAATTGTTAACTCGTAGCCTACCTTAACTATGTACGTTAATGTCAAGTACAAAGAGCACTGTTGTTAAATCTACCCCACTAATTGGCTGAGTCGTAATAGGGTTTTGTGCATGAAGGTGAATTTAATTACCATATTAAATAAAATAATATCATTATACCATTCATTATCACCTCATTTCACTTTAAACAATTGAAATTCAACAGGTAAACATAGGAAACTTTTTTAAAATTCAGAACAATTAAAATAACAAGTATAGAATTGCACGAAACATAATGTACTCGAAAACATATCTAATACACTGTGTTACATTCATCACCCTCGCACTCCAGGGACAGAGGCTGAAAAGTATGTACAGAAATCTGCTGCATGAAATTTGATGTAAATTTAATACTGATTTTGTGGAAAATTTGAATTACGTTGGGAAGTGTTTACAATCACACCTGTCTGGTTAGACATGATGTGACTAGTTTTTTGACATGTAGATGAAAAGCTTGTGTGGATGTAATATGTCAAATTAAACAAGAGAACCTGCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU265279 lncRNA downstream 55536 6888708 ~ 6889021 (-) True G233803
TU265275 lncRNA downstream 60043 6884308 ~ 6884514 (-) True G233799
TU265267 lncRNA downstream 79046 6865385 ~ 6865511 (-) True G233791
TU265244 lncRNA downstream 166246 6778112 ~ 6778311 (-) True G233770
TU265221 lncRNA downstream 209181 6735128 ~ 6735376 (-) True G233747
TU265096 lncRNA upstream 14488 6960373 ~ 6963408 (-) True G233627
TU265289 lncRNA upstream 65179 7011064 ~ 7011977 (-) True G233812
TU265302 lncRNA upstream 94226 7040111 ~ 7049000 (-) True G233822
TU265323 lncRNA upstream 126941 7072826 ~ 7073170 (-) True G233843
TU265366 lncRNA upstream 194127 7140012 ~ 7140351 (-) True G233881
CI01000054_06895032_06942103.mRNA mRNA downstream 2195 6894828 ~ 6942362 (-) True CI01000054_06895032_06942103
CI01000054_06874039_06875193.mRNA mRNA downstream 69248 6873320 ~ 6875309 (-) True CI01000054_06874039_06875193
CI01000054_06835747_06861855.mRNA mRNA downstream 81478 6834420 ~ 6863079 (-) True CI01000054_06835747_06861855
CI01000054_06830485_06831336.mRNA mRNA downstream 113221 6828992 ~ 6831336 (-) True CI01000054_06830485_06831336
CI01000054_06629482_06641861.mRNA mRNA downstream 302397 6629305 ~ 6642160 (-) False CI01000054_06629482_06641861
CI01000054_06951426_06955263.mRNA mRNA upstream 5541 6951426 ~ 6955263 (-) True CI01000054_06951426_06955263
CI01000054_06956328_06957402.mRNA mRNA upstream 10436 6956321 ~ 6958488 (-) True CI01000054_06956328_06957402
CI01000054_07006908_07009054.mRNA mRNA upstream 60990 7006875 ~ 7009054 (-) True CI01000054_07006908_07009054
CI01000054_07026336_07030820.mRNA mRNA upstream 80262 7026147 ~ 7031509 (-) True CI01000054_07026336_07030820
CI01000054_07033076_07038297.mRNA mRNA upstream 85815 7031700 ~ 7038297 (-) True CI01000054_07033076_07038297
TU265088 other downstream 290544 6649149 ~ 6654013 (-) True G233619
TU263564 other downstream 1735317 5206199 ~ 5209240 (-) True G232274
TU263226 other downstream 2272324 4672197 ~ 4672233 (-) True G231958
TU263225 other downstream 2272324 4672197 ~ 4672233 (-) True G231958
TU262888 other downstream 2961734 3981847 ~ 3982823 (-) True G231645
TU265381 other upstream 219550 7171325 ~ 7171673 (-) True G233891
TU266788 other upstream 2302154 9248039 ~ 9248538 (-) True G235216
TU266868 other upstream 2537262 9485215 ~ 9485318 (-) False G235290
TU266867 other upstream 2537467 9485215 ~ 9485318 (-) False G235290
TU266866 other upstream 2537565 9485215 ~ 9485318 (-) False G235290

Expression Profile