RNA id: CI01000054_07011099_07011947.mRNA



Basic Information


Item Value
RNA id CI01000054_07011099_07011947.mRNA
length 1076
RNA type mRNA
GC content 0.46
exon number 1
gene id CI01000054_07011099_07011947
representative True

Chromosome Information


Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 7011023 ~ 7012098 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTAAAAATGGGTGTGTAGATAAAGTTTTATTGTCGACACTAGAAACCTTGCTCTCTTGATAAGTTCGATTAACGTGATGGCGGTGGTGGTTGACAAATATATCTTGACCGAGGCGCTCTCTGCCATTCTGGGAGTCACTGTGAAATTGCAGTCAGACTGTAAGGATTTAAATGGAGCCATTCAACTGCATATTACCAGTCTTACAACTCTGGCCCTTCTTGGTTATGATGCGTTCATGCTTGTGGTCCAGCCTGTGAGTTATATAACTTCTTTACTGACGGGGTGGTTTATTGGTGATCAGAAAAATTCCCAAGAAACCCCGAAAAACGAAAGCGCGAGCTCTTCTCTCCGGAAGGAATTATTTGTGATCCCAGATGACTTTTTCGACGAAAAGTTTGACTTTGACTTCACAAACATGTCCGAGTCAAAGTCTGATGAGTGCATGCGCGGGAACGAGCCGTACAAGCGCCCCTACGGGTGGATGCGCTTCGCGCTGAAGGTGCGGGACAAATACCCGGACGGGAACGCTTGGCTGGGAACAGGTGGATGGAGGAGCCGTTCCGCGCCCGGTGAGTGGCCAGTCTCCTACCACGGAACCGGTTTACAGGGGGCTGAGGCCATCATACAATCTCATTTCAAGGCGGGAGACCGTCAGGCTTACGGAAGAGGGATTTATTCATCCCCAGACATCAACGTGGCAGATGGCTACGCGACAAGCAAGAAATTCACCTCGCAAAAGAATGGAAAGACTTACAAAGTTATCATGCAGAACAGAATCAACCCCAAGAAGAGGGAAATCATCAAGGGGAAGAACTTTTGGTTGGTCCGTATTCCTGAAGGAACATCAGCTGAGAAAGAGAAAGAAATAGTGGAGAGTTCAATCCGCCCTTATGGCCTCTTGCTTAAAGAGGTGGAAGGTAAATAAAGTGGCTCTCAGAATTGAGCTTTACTCTGTCTCTTGGTCATACATTTGTACATTCAAATCTTCTGACTTTTGGTTAAAGAGATGTTTATTATCATATGAGATAGGCCTATTGTATTTTTCTCTCAAATAGACATGGAATTGGATAGCTGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU264241 lncRNA upstream 1800 7007111 ~ 7009223 (+) True G232848
TU264281 lncRNA upstream 7049 7003611 ~ 7003974 (+) True G232886
TU264278 lncRNA upstream 65190 6945630 ~ 6945833 (+) True G232883
TU264277 lncRNA upstream 65427 6944556 ~ 6945596 (+) True G232882
TU264271 lncRNA upstream 93743 6915946 ~ 6917280 (+) True G232876
TU264320 lncRNA downstream 55316 7067414 ~ 7067653 (+) True G232914
TU264349 lncRNA downstream 164241 7176339 ~ 7176575 (+) True G232942
TU264351 lncRNA downstream 166150 7178248 ~ 7178633 (+) True G232944
TU264355 lncRNA downstream 169804 7181902 ~ 7182155 (+) True G232948
TU264313 lncRNA downstream 206041 7218139 ~ 7219649 (+) True G232907
CI01000054_06990478_06999311.mRNA mRNA upstream 11712 6990405 ~ 6999311 (+) True CI01000054_06990478_06999311
CI01000054_06974533_06985526.mRNA mRNA upstream 23986 6973352 ~ 6987037 (+) True CI01000054_06974533_06985526
CI01000054_06967494_06972758.mRNA mRNA upstream 38147 6967014 ~ 6972876 (+) True CI01000054_06967494_06972758
CI01000054_06962442_06966056.mRNA mRNA upstream 44785 6962333 ~ 6966238 (+) True CI01000054_06962442_06966056
CI01000054_06865381_06869404.mRNA mRNA upstream 141081 6865381 ~ 6869942 (+) True CI01000054_06865381_06869404
CI01000054_07019424_07021726.mRNA mRNA downstream 7326 7019424 ~ 7022311 (+) True CI01000054_07019424_07021726
CI01000054_07040367_07056299.mRNA mRNA downstream 28269 7040367 ~ 7057570 (+) True CI01000054_07040367_07056299
CI01000054_07119711_07124720.mRNA mRNA downstream 107613 7119711 ~ 7124770 (+) True CI01000054_07119711_07124720
CI01000054_07145831_07153505.mRNA mRNA downstream 133407 7145505 ~ 7154654 (+) True CI01000054_07145831_07153505
CI01000054_07189617_07192052.mRNA mRNA downstream 175879 7187977 ~ 7192069 (+) True CI01000054_07189617_07192052
TU264264 other upstream 122520 6887912 ~ 6888503 (+) False G232870
TU264265 other upstream 122520 6888114 ~ 6888503 (+) True G232870
TU264006 other upstream 635129 6374850 ~ 6375894 (+) True G232659
TU263932 other upstream 704163 6304307 ~ 6304441 (+) True G232608
TU263881 other upstream 969160 5993660 ~ 6041863 (+) True G232558
TU264435 other downstream 555425 7567523 ~ 7609893 (+) True G233024
TU264744 other downstream 1292501 8304599 ~ 8304949 (+) True G233306
TU264679 other downstream 1293839 8305937 ~ 8306053 (+) True G233242
TU267167 other downstream 3376038 10388136 ~ 10392378 (+) True G235560
TU267998 other downstream 4552878 11564976 ~ 11565121 (+) True G236317

Expression Profile