Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00016675 |
| length | 771 |
| RNA type | mRNA |
| GC content | 0.47 |
| exon number | 3 |
| gene id | XLOC_008298 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007126.7 |
| NCBI id | CM002899.2 |
| chromosome length | 48040578 |
| location | 6459847 ~ 6493615 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0097324 | melanocyte migration | biological_process |
| GO:0050435 | amyloid-beta metabolic process | biological_process |
| GO:0006508 | proteolysis | biological_process |
| GO:0006509 | membrane protein ectodomain proteolysis | biological_process |
| GO:0005768 | endosome | cellular_component |
| GO:0005794 | Golgi apparatus | cellular_component |
| GO:0005802 | trans-Golgi network | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0004190 | aspartic-type endopeptidase activity | molecular_function |
| GO:0016787 | hydrolase activity | molecular_function |
| GO:0008233 | peptidase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-041010-68 | Predicted to enable aspartic-type endopeptidase activity. Acts upstream of or within melanocyte migration. Predicted to be located in endoplasmic reticulum and plasma membrane. Predicted to be integral component of membrane. Predicted to be active in endosome; membrane; and trans-Golgi network. Is expressed in neural crest; optic vesicle; pigment cell; polster; and retina. Human ortholog(s) of this gene implicated in Alzheimer's disease. Orthologous to human BACE2 (beta-secretase 2). |
| ensembl_id | ENSDART00000157250 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00018887 | lncRNA | upstream | 299344 | 6159009 ~ 6160503 (+) | True | XLOC_008297 |
| TCONS_00018886 | lncRNA | upstream | 606505 | 5841557 ~ 5853342 (+) | True | XLOC_008291 |
| TCONS_00018885 | lncRNA | upstream | 988339 | 5468360 ~ 5471508 (+) | True | XLOC_008289 |
| TCONS_00018884 | lncRNA | upstream | 988996 | 5468098 ~ 5470851 (+) | False | XLOC_008289 |
| TCONS_00018883 | lncRNA | upstream | 1180944 | 5277903 ~ 5278903 (+) | True | XLOC_008279 |
| TCONS_00018756 | lncRNA | downstream | 303665 | 6785649 ~ 6786055 (+) | True | XLOC_008304 |
| TCONS_00018888 | lncRNA | downstream | 385292 | 6867276 ~ 6875548 (+) | True | XLOC_008306 |
| TCONS_00018757 | lncRNA | downstream | 658426 | 7140410 ~ 7140882 (+) | True | XLOC_008308 |
| TCONS_00018758 | lncRNA | downstream | 1252505 | 7734489 ~ 7737531 (+) | True | XLOC_008311 |
| TCONS_00016691 | lncRNA | downstream | 1323795 | 7805779 ~ 7805920 (+) | True | XLOC_008312 |
| TCONS_00016672 | mRNA | upstream | 341179 | 6109861 ~ 6118668 (+) | False | XLOC_008296 |
| TCONS_00016673 | mRNA | upstream | 341179 | 6114109 ~ 6118668 (+) | False | XLOC_008296 |
| TCONS_00016674 | mRNA | upstream | 341179 | 6117502 ~ 6118668 (+) | True | XLOC_008296 |
| TCONS_00016670 | mRNA | upstream | 441927 | 5973909 ~ 6017920 (+) | False | XLOC_008295 |
| TCONS_00016671 | mRNA | upstream | 445530 | 5973967 ~ 6014317 (+) | True | XLOC_008295 |
| TCONS_00016678 | mRNA | downstream | 170412 | 6652396 ~ 6666303 (+) | False | XLOC_008300 |
| TCONS_00016679 | mRNA | downstream | 179359 | 6661343 ~ 6666232 (+) | True | XLOC_008300 |
| TCONS_00016682 | mRNA | downstream | 291892 | 6773876 ~ 6784279 (+) | False | XLOC_008303 |
| TCONS_00016683 | mRNA | downstream | 293010 | 6774994 ~ 6784965 (+) | True | XLOC_008303 |
| TCONS_00016684 | mRNA | downstream | 304773 | 6786757 ~ 6807963 (+) | True | XLOC_008305 |
| TCONS_00016665 | other | upstream | 604622 | 5855111 ~ 5855225 (+) | True | XLOC_008292 |
| TCONS_00016634 | other | upstream | 2953424 | 3506309 ~ 3506423 (+) | True | XLOC_008259 |
| TCONS_00016623 | other | upstream | 3774141 | 2685055 ~ 2685706 (+) | True | XLOC_008246 |
| TCONS_00016622 | other | upstream | 3785257 | 2673935 ~ 2674590 (+) | True | XLOC_008245 |
| TCONS_00016611 | other | upstream | 4101222 | 2358511 ~ 2358625 (+) | True | XLOC_008239 |
| TCONS_00016677 | other | downstream | 77066 | 6559050 ~ 6559185 (+) | True | XLOC_008299 |
| TCONS_00016680 | other | downstream | 196537 | 6678521 ~ 6727082 (+) | True | XLOC_008301 |
| TCONS_00016681 | other | downstream | 288602 | 6770586 ~ 6772120 (+) | True | XLOC_008302 |
| TCONS_00016699 | other | downstream | 2200838 | 8682822 ~ 8682937 (+) | True | XLOC_008317 |
| TCONS_00016700 | other | downstream | 2249768 | 8731752 ~ 8731866 (+) | True | XLOC_008318 |
