RNA id: CI01000054_07755766_07787767.mRNA



Basic Information


Item Value
RNA id CI01000054_07755766_07787767.mRNA
length 1465
RNA type mRNA
GC content 0.46
exon number 13
gene id CI01000054_07755766_07787767
representative True

Chromosome Information


Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 7755766 ~ 7788110 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATACTGAGAAGAGCTGACAAAAATGATGATGGGAAGCTGTCCTTTGATGAGTTCAAGGCTTATTTCTCAGATGGTGTTCTGTCAGGAGATGAATTAAAGGAGCTTTTCCATACAATTGACACTCATAACACAGAGAATGTGGAGACGGATGAGCTGTGTGAATACTTCTCTCAGCATCTTGGGGAATATGAAAATGTCCTTGCTGCCTTGGAAGACCTGAACGTATCCATACTGAAAGCCATGGACAAAACCAAGAAGGCCGCCTCTATAAACAGCAACCGCACTTCTGAATGTCATACTGGTGCTCGTTCTCTTGCCTTCAGTTTTCAGGACTACCAGGAAGCCACGCATCTGGAGCAGTTTGTGACACGTTTCCTGTTAAAGGAGACCACCAGTCAGTTGCAGTCTCTCCAGAGCTCTCTGGAGTGTGCCATGGAGACCACAGCTGAGCAGACCCGGCAGGAGAGGCAAGTGACACAGAATACACTTTTACATTTTGTTAAACACAATATCTACCAAACATGTGGATGTGCAGCAGCTGTGTTGTTCCACTCACCTTACGATCTCAAGAAAATTAGCTGGAGCAGCTGGCATAAAGAAATGATGAATCCTGAGGTGATTATTCTCAGCCTCAGTGCTCTGGAGGAAGAAAAGGGCACATACGCACACCCAGCAGGCTTACAGCTGAGAGCTGATCTGGAAGGAAGTTTATGTAGGAGGGAGTGTGAGGAAAGACTATCCGATTTGCGTTTGGAGCCTGTAGAAGAAGAGGTGTTGGAAAGCACCACCAAATCACACATCCTGATCGTGCAGAGGCAGCTGTCCGTGCTGGAGGAGGAAGTGGAGGAGTTTCGTCTGGCTCTCAGGCAGTACATTGACTGTGCCAACACCCAGACCGGCTGCCTCCACGTTGCAGTTCAGCGGCTTGCCAATGAATCCCGCTTCATACTGTACGAGTTCTGGGAGCAAAGCAACGTGTGGAAGAATCATCTGCAAACCAATTACAGCAAAACCTTCCAGAGAGGAAATGTGGATTTCTTAGAGACACCAGAGATTATGACGACTATGCTGGTTCCAGGTGACACCAGACATAATGAGGACCTCACAAGCCACAAAGACTGACATCTGGATCCCTGTCATCAGGAAGTGAGCACTTGAGTTCATATTTGCTGTATAGTCATAGTGACTAGCACTTGCTTTTCATGTTGTTACATTATTAGCTCTATATGAGTAGTGTACTGTAAACTGTAGACAATATCATATAAAGCAATGAGACCTTTGTACTGATGATAGCACTCCAATCCCATCAGAGTTGCATAAGCTATGTGTCCATCTGTGACGTGACAGTACAGTGATGTGTGCTGTCAGTCCGTCTCCTCACGTAGCAGTTCTTGTGATGTCATTGTTCCCGAACACAACACTGTTCCCTGACACTACCGTTCCTTATGTAGTTTGTCAGCTCTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU264436 lncRNA upstream 19264 7734821 ~ 7736502 (+) True G233025
TU264517 lncRNA upstream 23662 7731855 ~ 7732104 (+) True G233096
TU264429 lncRNA upstream 239160 7514404 ~ 7516606 (+) True G233018
TU264427 lncRNA upstream 242066 7508766 ~ 7513700 (+) True G233017
TU264476 lncRNA upstream 334409 7420428 ~ 7421357 (+) True G233065
TU264437 lncRNA downstream 2920 7791030 ~ 7793543 (+) True G233026
TU264544 lncRNA downstream 41160 7829270 ~ 7829472 (+) True G233123
TU264548 lncRNA downstream 44622 7832732 ~ 7832945 (+) True G233127
TU264552 lncRNA downstream 59431 7847541 ~ 7848125 (+) True G233131
TU264553 lncRNA downstream 60740 7848850 ~ 7849124 (+) True G233132
CI01000054_07726558_07730944.mRNA mRNA upstream 24755 7726558 ~ 7731011 (+) True CI01000054_07726558_07730944
CI01000054_07719547_07722201.mRNA mRNA upstream 33495 7719497 ~ 7722271 (+) True CI01000054_07719547_07722201
CI01000054_07675827_07711906.mRNA mRNA upstream 43784 7675827 ~ 7711982 (+) True CI01000054_07675827_07711906
CI01000054_07620269_07633084.mRNA mRNA upstream 122655 7618737 ~ 7633111 (+) True CI01000054_07620269_07633084
CI01000054_07599184_07601743.mRNA mRNA upstream 152641 7597906 ~ 7603125 (+) True CI01000054_07599184_07601743
CI01000054_07816225_07819805.mRNA mRNA downstream 28115 7816225 ~ 7820975 (+) True CI01000054_07816225_07819805
CI01000054_07836152_07845992.mRNA mRNA downstream 47494 7835604 ~ 7846232 (+) True CI01000054_07836152_07845992
CI01000054_07852818_07853423.mRNA mRNA downstream 64291 7852401 ~ 7854477 (+) True CI01000054_07852818_07853423
CI01000054_07997892_08012569.mRNA mRNA downstream 209782 7997892 ~ 8012883 (+) True CI01000054_07997892_08012569
CI01000054_08013660_08018583.mRNA mRNA downstream 225550 8013660 ~ 8018741 (+) True CI01000054_08013660_08018583
TU264435 other upstream 145873 7567523 ~ 7609893 (+) True G233024
TU264264 other upstream 867263 6887912 ~ 6888503 (+) False G232870
TU264265 other upstream 867263 6888114 ~ 6888503 (+) True G232870
TU264006 other upstream 1379872 6374850 ~ 6375894 (+) True G232659
TU263932 other upstream 1448906 6304307 ~ 6304441 (+) True G232608
TU264744 other downstream 516489 8304599 ~ 8304949 (+) True G233306
TU264679 other downstream 517827 8305937 ~ 8306053 (+) True G233242
TU267167 other downstream 2600026 10388136 ~ 10392378 (+) True G235560
TU267998 other downstream 3776866 11564976 ~ 11565121 (+) True G236317
TU268596 other downstream 3844866 11632976 ~ 11634064 (+) True CI01000054_11633235_11635069

Expression Profile



Homologous


species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00029386 True 1520 mRNA 0.47 13 NC_007130.7 31437691 ~ 31522625 (-)