RNA id: CI01000054_08032736_08043035.mRNA


Basic Information

Item Value
RNA id CI01000054_08032736_08043035.mRNA
length 1355
RNA type mRNA
GC content 0.42
exon number 7
gene id CI01000054_08032736_08043035
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 8032385 ~ 8043316 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATCTCAGTCCTAACCTCAGTTTGGTTGTTTGGAATGTTGTTCCAGGACCAACTAGGAACATGCCATACTGATCCAGGAACATGCCCTACTTGGCAAAATCACACGACACTGTCTTTTTAGTAACTAGTTATCAAAATCAAATAGCAGTACACTTGTTACAGGTCCAATTCCTCCAGAGCAAACTGGGGTTAAGGGCACAATGCGGTGATTGAACCCACAATGTTGTGATTACCAGCCCAGATCTTTAACCATTACACCACACTTCTGCGTAGTAGAAGAAATGACCAGAAGTCAGCAGCCACTTCAGCTACTGTGTCTTTATCAGGTGTACCCATGGAAACAGGGAAATCTGAGAAAAGTTACTATTACTCCCTCTCCACAGATGCCTGACATGTGTTTTGTATCAGTGTGTGTCTTGTCTTTGCTGCAGTGCTGTATTGTACTGTTTATTCAGCTCTTTTTGGGTGATGGAGGGACATCATCCTGTCCCGTCTTTGGTTTAGAAGCACTGAACCAAAGGGCTGATCATTGTGTCCGACATATAAAAAATAGACAAGCACTGCACATGCCACATGTTCATTATGAGCTACAGCACAGAGAAGACATAGAAAGGATACTAAGAATAGCAGAGCTAATAGTGATGTCATGTCCCGTGGGAATCGGTGGCAAGGGATCTGTTACTGGGCTCATCTGGTTTCATTTTGAATCCTGGCTGACGGTGAGAACATGCTCATGTTCAACTTATGTAGTAAACCAGTTAATTTCAGAAGACTGGATTTCCTTCTGTACCATCGAGCTGCACAAAACAGGCACAGGTCCAGGCATGATGTTTGGTCTCTCTCTCTTTTTTCCTACTCTATTTAGGAGACACGCTGAGAGGCCAAATGTCCTGAAATTCCAGGACTTTGCTCTGCTTGCACAACAAAAAACGGAACATGAAAGGATAGAAATCATTGTTTTTATGTCAGTTTTCTTTCCCAGGCCTAAAAATAAGAGCCTGTAACAGTGTACAGAGATTTTGGAGGATTTAATTACGGGCTACACTAAAGAATCTTGAACACAATAGGTTCTTTTAGATACTGGAGGTCTACAATAACTCAGCTTGGAGTTGTCAGTATACAGATGCGTAAAACCTGGGGAGAAAGTGGACAGAATATTCCCAGGCTCTGGCTTTTCAGTGCTCCTCTGGGCTTATGTGGTTGAGCATCCCAGTAAACACATGGACGCTTTTGTGTGTCACTCTTTCCATTCTGTTATTCATTTATGCTTTACTGGATCCATATTTAAATGCTGGTTGCCTGAAAGAGTCCCATGATTTGGTAATTCTGTACATCATCTCCTCTTAACAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU265715 lncRNA downstream 987 8030895 ~ 8031398 (-) True G234207
TU265669 lncRNA downstream 131605 7900538 ~ 7900780 (-) True G234167
TU265564 lncRNA downstream 195545 7836063 ~ 7836840 (-) True G234065
TU265633 lncRNA downstream 197764 7834072 ~ 7834621 (-) True G234131
TU265631 lncRNA downstream 199683 7832492 ~ 7832702 (-) True G234129
TU265730 lncRNA upstream 77862 8121178 ~ 8121700 (-) False G234220
TU265731 lncRNA upstream 77862 8121178 ~ 8121627 (-) False G234220
TU265728 lncRNA upstream 78026 8121342 ~ 8121700 (-) False G234220
TU265729 lncRNA upstream 78026 8121342 ~ 8121627 (-) True G234220
TU265783 lncRNA upstream 167754 8211070 ~ 8211278 (-) True G234268
CI01000054_08021522_08026014.mRNA mRNA downstream 6371 8020943 ~ 8026014 (-) True CI01000054_08021522_08026014
CI01000054_07985093_07994157.mRNA mRNA downstream 37454 7984803 ~ 7994931 (-) True CI01000054_07985093_07994157
CI01000054_07978918_07980431.mRNA mRNA downstream 51910 7978489 ~ 7980475 (-) True CI01000054_07978918_07980431
CI01000054_07936687_07947936.mRNA mRNA downstream 84449 7936471 ~ 7947936 (-) True CI01000054_07936687_07947936
CI01000054_07874540_07894985.mRNA mRNA downstream 137063 7874244 ~ 7895322 (-) True CI01000054_07874540_07894985
CI01000054_08091223_08096443.mRNA mRNA upstream 47281 8090597 ~ 8096443 (-) True CI01000054_08091223_08096443
CI01000054_08099220_08112291.mRNA mRNA upstream 54359 8097675 ~ 8112291 (-) True CI01000054_08099220_08112291
CI01000054_08228712_08238666.mRNA mRNA upstream 185345 8228661 ~ 8238666 (-) True CI01000054_08228712_08238666
CI01000054_08272679_08293481.mRNA mRNA upstream 229203 8272519 ~ 8295165 (-) True CI01000054_08272679_08293481
CI01000054_08353876_08358232.mRNA mRNA upstream 310060 8353376 ~ 8358232 (-) True CI01000054_08353876_08358232
TU265381 other downstream 860712 7171325 ~ 7171673 (-) True G233891
TU265088 other downstream 1378372 6649149 ~ 6654013 (-) True G233619
TU263564 other downstream 2823145 5206199 ~ 5209240 (-) True G232274
TU263226 other downstream 3360152 4672197 ~ 4672233 (-) True G231958
TU266788 other upstream 1204723 9248039 ~ 9248538 (-) True G235216
TU266868 other upstream 1439831 9485215 ~ 9485318 (-) False G235290
TU266867 other upstream 1440036 9485215 ~ 9485318 (-) False G235290
TU266866 other upstream 1440134 9485215 ~ 9485318 (-) False G235290
TU266865 other upstream 1440168 9485215 ~ 9485318 (-) False G235290

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00029371 True 980 lncRNA 0.47 3 NC_007130.7 30962723 ~ 30965661 (-)