RNA id: CI01000054_08377415_08378038.mRNA



Basic Information


Item Value
RNA id CI01000054_08377415_08378038.mRNA
length 1382
RNA type mRNA
GC content 0.39
exon number 2
gene id CI01000054_08377415_08378038
representative True

Chromosome Information


Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 8377125 ~ 8378689 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GCATAAAGACATAAACATCAAAAACAATCAGAACATATGAAATAGTCCTATTTGCATGCACTTTTTTATTTTCCCATCCTTCGTACGTTTCTCATTTTAACCCAGACTTTGAACATAATAGCATTAAAGTAATTTACATAAAACGCTGAATCCAAATTACAATAGCTAGTTTTTTAATGTATAAACGAATATACCTATTGTGTACAATGATGTAATAAAAAAAATGTAATAGAAATTCCAACAAATTAATTATTATCCTTGCACAAACACCGTAAAACAACAACCGGAAAATGGAATGGGGGATGGGCTCGCCCTTGAACATAGAAGGTCGTTTCGAGAGTGTGCGCGCGATAGGACCGCGTGATCATCAACTCCATTTTGTGTTGAAAAGAAACGCCCGAAAGCGCGCTCACGACACCGGAGTGACGCAAAAAACGTCAGAACTATATATACTGAGTCCCACCCTTCTAGAGCATTCCTGGATTTGTCTGAGGTCTGAGTCAGTCTCAGTGAAGATCTGGCGTCGAGGATTTTTCAACTGTGTACGAAGATCAAACCCCAAAAAACTCAATTTTTCTACTCGAGTAACGGACATTCGCTTCACTGCTTTTTTGCTCCAGATTGTTCAAGAAGGAAAAGCTCAATTTCAGCCACCACAATCCCGCCCATTATGCCATTTTTCAGCCAATAATGCTAAAGTCATGACAGTTTACGTTCTCTTAAACTGTTAAAAAGCTGAAATTTGTTGCTGTTAAGCACAATATATTAATAGCAACCCGAGACGCAGAGGAGAGGTATTAATAGTAAGTGTTCTTTCAAACCAATTTGAATCGAAATTACGTAAGCTAACCAATTGTCTGTGTTGAAAATGATTCCAGATATAAATATAGATAAAACTTCTAGAAGGATCTCGAATGTGGCGACCTAAATGCGCCACAGTTTCTAGAGGCAGACAGCATGCTGAGATAAAGCGAGACAGCTAGCTAGCGTATGAGCTCACACCGCAAAGCCAAAGCAGCGGCTTCAACGCCCTGCTTCTCTTTGTGTGTGAGACGGAGTAATCCTAATGATTATTAAAGTAACGATAAATCATCGAATAATAAGCTAGCCATCGCTGATCATAAGCAATCTGTACATAAAGATTGCCATAGGCAGAGCCAGGAAGTGACTGCATTCATTTGGGCTTTTTTTTATAAACTGCATTCTTTTCAAAGGAGAGCTCACTGGAACAATCAACGCAATCTGCACATAAAGATTGCCAAGTGGCGCCTGTGGATTTAGCCGAACGGAGAAAAAAAAAACCCAGACTGAAATGCAACATTTTGTTCATAATAATGTCGTTAGGTGTTATTAGTTGGCGGAACTGGATACAGTTTGATGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU264743 lncRNA upstream 72677 8304082 ~ 8304448 (+) True G233305
TU264735 lncRNA upstream 85316 8291607 ~ 8291809 (+) True G233297
TU264700 lncRNA upstream 92572 8284276 ~ 8284553 (+) True G233262
TU264692 lncRNA upstream 111607 8264318 ~ 8265518 (+) True G233254
TU264662 lncRNA upstream 255425 8121096 ~ 8121700 (+) True G233233
TU264761 lncRNA downstream 115555 8494244 ~ 8494479 (+) True G233322
TU264774 lncRNA downstream 143029 8521718 ~ 8522154 (+) True G233335
TU264776 lncRNA downstream 148145 8526834 ~ 8527577 (+) True G233337
TU264777 lncRNA downstream 149188 8527877 ~ 8528174 (+) True G233338
TU265964 lncRNA downstream 182908 8561597 ~ 8561807 (+) True G234433
CI01000054_08362528_08374374.mRNA mRNA upstream 2164 8362528 ~ 8374961 (+) True CI01000054_08362528_08374374
CI01000054_08336243_08350281.mRNA mRNA upstream 26211 8336243 ~ 8350914 (+) True CI01000054_08336243_08350281
CI01000054_08325126_08329621.mRNA mRNA upstream 47409 8325126 ~ 8329716 (+) False CI01000054_08325126_08329621
CI01000054_08252231_08263823.mRNA mRNA upstream 113173 8252052 ~ 8263952 (+) True CI01000054_08252231_08263823
CI01000054_08243772_08246444.mRNA mRNA upstream 130395 8243772 ~ 8246730 (+) True CI01000054_08243772_08246444
CI01000054_08378811_08396034.mRNA mRNA downstream 26 8378715 ~ 8396222 (+) True CI01000054_08378811_08396034
CI01000054_08419492_08424760.mRNA mRNA downstream 39930 8418619 ~ 8424921 (+) True CI01000054_08419492_08424760
CI01000054_08485645_08496381.mRNA mRNA downstream 106739 8485428 ~ 8496865 (+) True CI01000054_08485645_08496381
CI01000054_08675009_08686170.mRNA mRNA downstream 296320 8675009 ~ 8686679 (+) True CI01000054_08675009_08686170
CI01000054_08695322_08702750.mRNA mRNA downstream 316633 8695322 ~ 8703309 (+) True CI01000054_08695322_08702750
TU264679 other upstream 47537 8305937 ~ 8306053 (+) True G233242
TU264744 other upstream 72176 8304599 ~ 8304949 (+) True G233306
TU264435 other upstream 767232 7567523 ~ 7609893 (+) True G233024
TU264264 other upstream 1488622 6887912 ~ 6888503 (+) False G232870
TU267167 other downstream 2009447 10388136 ~ 10392378 (+) True G235560
TU267998 other downstream 3186287 11564976 ~ 11565121 (+) True G236317
TU268596 other downstream 3254287 11632976 ~ 11634064 (+) True CI01000054_11633235_11635069
TU268594 other downstream 3269290 11647979 ~ 11649025 (+) False CI01000054_11648262_11648786
TU268595 other downstream 3269290 11647979 ~ 11649025 (+) True CI01000054_11648262_11648786

Expression Profile