RNA id: CI01000054_08574533_08590975.mRNA


Basic Information

Item Value
RNA id CI01000054_08574533_08590975.mRNA
length 1273
RNA type mRNA
GC content 0.43
exon number 9
gene id CI01000054_08574533_08590975
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 8574480 ~ 8591292 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGGCTCTTTAATCAAGGAATCAGACAGTCTGAATAAAATCAACATAGAAATTAGAAGTTATTTTTTCAAGGAAAAACTTGAGGAATACTTCTGTCATCAGTGATAGATGAGTCTTAACCTTTATCTCTTGGAAATTCAGACAATGAATGACTTTTATATCATAATATAACCAAGCGAGTGTGTGTTCCAGCGGTCAGCCTTTGTTTTGATAGATTTATTATTGGCTTAAAGATATAATGTTTTTAAAAAATAAGAGGCTACTTGACCGGGGCATTTGGAAGATCAGCTCAAACTCTCACATTACACTGTGAAGAGCTATGGCTGTTGTGATTAAGTGTGTGTTTATGCATGAGGAGAATCCTCTAACAGGATTACTGGAGATGGCCTTTCGTTTCACCTCCGGTACTGGCACACAAGCTCTCAACAAGACCATTTTGCCCTCCATAAGCAGCCACATCCACATAGCTGTTGGTGGTGGTTCAGGTGCCATTTTTGACAACCAGCATAAATCCCATGTTGGTCTGATGCCTAAAGCCATGATATGCTCTCAAACAAGCAAGCTACTTTTCCCAAAGAAAGATATTGCTTCATTATCATGCTCTAAATCTATAAGAAGAGCCTTGAACATCCATTCTTCCACTCATGCATTAAAGAGAGTTAGGCCGGAGCCAGTGCTTCAGGTTTATTCTCTTATATCTGGGTTGGAGTATTCTGTGGTTAACAATCTGGGCTGCTTTATGGCTAATGTGGCTCATATGCATCACTGGCTTAACAAACCATGGCTAATGTCTCTAAGCACCTTCTGTCAACCAGGTGCTACAGTCGGCTGGTTATTGACAGAGAAAAAGAGCACAAGCACTCATAAACCTTTTAATAGCCATCTGCAAAGCTGCGATCCTGTGTGGGATGTGTCAGGAACGACACATTGGCATGCTGGAACACCTGTCTCTCCCCTGACACCGCTGCTGTTTTCCTTCAAGGGAGGCACAAGACAGTGCAGGAATATGACTGGCATCAGTCTTGTCAGAGTCTGTGGCTCTGTAACAGGGGAATCTGCAATTAGAAATAGTGTGGGCCATCATAGCGCCTTTGCCGCCACCTCAGTAGGCCCGTCGCCATGGAAACCCCAACCTGGCAGGTCTGAAATGCTTCTTACTGTGGCGGCAGCATATGGAGAGATGGAAAAAAGTGGAGTGAAAAGAGACGAGAGTGTGGAGTAAAGGAAAAATAAGACTGAACAATGGACAGAGAGAGAGAGAGAAATGGAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU266460 lncRNA downstream 1802 8572436 ~ 8572678 (-) True G234899
TU265955 lncRNA downstream 19897 8554384 ~ 8554583 (-) True G234424
TU265941 lncRNA downstream 31237 8543036 ~ 8543243 (-) True G234410
TU265936 lncRNA downstream 47367 8526854 ~ 8527113 (-) True G234405
TU265924 lncRNA downstream 70207 8504037 ~ 8504273 (-) True G234393
TU266473 lncRNA upstream 6812 8598104 ~ 8598399 (-) True G234911
TU266488 lncRNA upstream 49249 8640541 ~ 8641175 (-) True G234926
TU266491 lncRNA upstream 75818 8667110 ~ 8667392 (-) True CI01000054_08652832_08667152
TU266497 lncRNA upstream 99019 8690311 ~ 8690595 (-) True G234935
TU266498 lncRNA upstream 114462 8705754 ~ 8706067 (-) True G234936
CI01000054_08425960_08439362.mRNA mRNA downstream 135050 8425943 ~ 8439430 (-) True CI01000054_08425960_08439362
CI01000054_08400578_08406066.mRNA mRNA downstream 168414 8400531 ~ 8406066 (-) True CI01000054_08400578_08406066
CI01000054_08375424_08376756.mRNA mRNA downstream 197500 8375071 ~ 8376980 (-) True CI01000054_08375424_08376756
CI01000054_08353876_08358232.mRNA mRNA downstream 216248 8353376 ~ 8358232 (-) True CI01000054_08353876_08358232
CI01000054_08272679_08293481.mRNA mRNA downstream 279315 8272519 ~ 8295165 (-) True CI01000054_08272679_08293481
CI01000054_08652832_08667152.mRNA mRNA upstream 61497 8652789 ~ 8668929 (-) False CI01000054_08652832_08667152
CI01000054_08692653_08694052.mRNA mRNA upstream 100847 8692139 ~ 8694052 (-) True CI01000054_08692653_08694052
CI01000054_08710955_08718087.mRNA mRNA upstream 119495 8710787 ~ 8718087 (-) True CI01000054_08710955_08718087
CI01000054_08721571_08723333.mRNA mRNA upstream 129716 8721008 ~ 8724082 (-) False CI01000054_08721571_08723333
CI01000054_08937312_08942587.mRNA mRNA upstream 346020 8937312 ~ 8942587 (-) True CI01000054_08937312_08942587
TU265381 other downstream 1402807 7171325 ~ 7171673 (-) True G233891
TU265088 other downstream 1920467 6649149 ~ 6654013 (-) True G233619
TU263564 other downstream 3365240 5206199 ~ 5209240 (-) True G232274
TU263226 other downstream 3902247 4672197 ~ 4672233 (-) True G231958
TU266788 other upstream 656747 9248039 ~ 9248538 (-) True G235216
TU266868 other upstream 891855 9485215 ~ 9485318 (-) False G235290
TU266867 other upstream 892060 9485215 ~ 9485318 (-) False G235290
TU266866 other upstream 892158 9485215 ~ 9485318 (-) False G235290
TU266865 other upstream 892192 9485215 ~ 9485318 (-) False G235290

Expression Profile