RNA id: CI01000054_08721571_08723333.mRNA


Basic Information

Item Value
RNA id CI01000054_08721571_08723333.mRNA
length 1933
RNA type mRNA
GC content 0.45
exon number 2
gene id CI01000054_08721571_08723333
representative False

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 8721008 ~ 8724208 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACAATCTATAATATAGGCTAGAAAAATATATACTCAAATAATATAAGCCAGAATGTAAAATATATAATTTAGTAATCTGTTCATTCAATTCTAGAGTACACATGCATCCACCAATTACCATGAGCAGTTTAATACAGCATACTGGTTGTTTATCAGAGTAGTGGGTAAAATATGCACTTATATTAATCATTAAATGGTACTGTTGTTTTGAGGACAGTGAGCCGAGTATATTGGACTACAGGGCACATTCACCACTGACATGTCATAAATGCTTTAGTTCTAGTGTGTAGCTCAATGGGTTCAATTAAACTGAAACCCCATTGCTCTCAGTGAGCAGAGAATTCAACAAGTCACCCTGTTGGTTCCCTCTTCTTTCTAGTCTAGTTTGATGCCATTTTCTATTTCCATGGAACTAAAGTGGAATCAAAGAGGTGGGACATGGAGGGTTCAATAAGTGGGCGGGGCCGCGCTTCAGATTGGTTCGAGTTCCCGAGGCACGCCCATGGGCGGGGCTTTTGGTTATCTTGAAGCGCTGTGGAACTAGAACTGGTAGTAGTAGGTCGTCTTCGACGCTCACGGGTGGAAGAGAAGAGTGGATCATCTCAAGTTTTCCTTATAAAGGAAAAAAAAATCACCAACTTTCCTCGCGCCTTTGGATGCACGTTACGCCCGTTGGTCTGGATTAATTTTTCTTCCACCTACCTGAATTTGAGTTATTTTTAATTTGCTTTAAAACCACATTAAGAATAATGGGATCCCAGGCATCAAAGGGAGGAGTGGCTGTGGAGGGGAAAGCCGCCGCTGCTGACCCGGCTGCCGTCAAGACTAACGGACAGGAGAACGGCCATGTTAAGACCAATGGCGATGTCTCTGCCAAGGCAGAGGGAGATGCCGCCACCACCAACGGTTCTGCGGAGGCAGCTAAGGAATCTGAGGCTGGAGCCGGTGATGCCATCGAGCCCGCGCCCGCCGCCGAGGGAGAGGCCGCCAAACCAGAGGGCGAGGCCACCAAGGAGACCCCCAAGAAGAAGAAGAAGAAGTTCTCCCTGAAGAACTCCTTCAAATTCAAGGGCATCTCACTGAAGAAGAACAAGAAGAGCACTGAGGTGAAGGAAGAGGCTGCTGCTGCTGCTCCGGCCACCGAAGAGAAGCCAGAGGAGAACGGGGCGGCCGCTGAGGAGAAGAAGGAGGAGGAGACCAAGCCCGAGGAGACACCCGCCCCCGCCGAGACCCCCAAGGCCGAGGAAACCGCAGCCAAGGCTGAGGAGCCTGCTGCCCCCAAGGAAGAGGCTGCTGCACCTGCTGCAGAGCCCACAAAACCAACAGAGGAGACCAGCTCAACACCTGCACCATCCGAACAGAAGGAGTGATTGTACTTCACAAAGGACTTTGTGAACTGTTTTTCCAAGAAAAAATATATATTTATATATATGTGTATATGTATACATATGTATATATACATGGATATATGTATATGTATATATACACATGTATGTGAAAAAAAGACTCCTCGTGCCACTTTCTTCAAGATTAAAAACAAATGACAGACTAGATTCACTAGTTCACTTCCCTGATTATGGCTCAAAGATCTGGAATTCCGAGCGAAAGCCGAAACCTTTTGGAAGCAGGATGTCAGTGCAAGAGTGAGTTGAGGATGGGATCAAGGAGGAGCATCTTTCAAGCCCACCACCGAATAGATGCGACTATACTGATGAATTGTGCAAGATAAACATCACCACATATAATGACTGTTAAAAAAAAGGAAATCGAAAAAGACTTGCCAACTTTCTACATTCCTATATTTTAACCCAAATTTAAGTATTTTGTGGTGTATAGAGAACCATTTTAAATATCCAGAAGGCTTTGTCTCGTTTGTTTGAAATCGCATTTTAATTTTCATCTTGGCTTTAAAAAAACAAAAAAACAAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU266498 lncRNA downstream 14941 8705754 ~ 8706067 (-) True G234936
TU266497 lncRNA downstream 30413 8690311 ~ 8690595 (-) True G234935
TU266491 lncRNA downstream 53616 8667110 ~ 8667392 (-) True CI01000054_08652832_08667152
TU266488 lncRNA downstream 79833 8640541 ~ 8641175 (-) True G234926
TU266473 lncRNA downstream 122609 8598104 ~ 8598399 (-) True G234911
TU266508 lncRNA upstream 9329 8733411 ~ 8733740 (-) True G234946
TU266531 lncRNA upstream 42363 8766445 ~ 8766674 (-) True G234969
TU266544 lncRNA upstream 72107 8796189 ~ 8796582 (-) True G234982
TU266578 lncRNA upstream 114534 8838616 ~ 8838853 (-) True G235016
TU266588 lncRNA upstream 124202 8848284 ~ 8848634 (-) True G235026
CI01000054_08710955_08718087.mRNA mRNA downstream 2921 8710787 ~ 8718087 (-) True CI01000054_08710955_08718087
CI01000054_08692653_08694052.mRNA mRNA downstream 26956 8692139 ~ 8694052 (-) True CI01000054_08692653_08694052
CI01000054_08652832_08667152.mRNA mRNA downstream 52079 8652789 ~ 8668929 (-) False CI01000054_08652832_08667152
CI01000054_08574533_08590975.mRNA mRNA downstream 129716 8574480 ~ 8591292 (-) True CI01000054_08574533_08590975
CI01000054_08425960_08439362.mRNA mRNA downstream 281578 8425943 ~ 8439430 (-) True CI01000054_08425960_08439362
CI01000054_08937312_08942587.mRNA mRNA upstream 213230 8937312 ~ 8942587 (-) True CI01000054_08937312_08942587
CI01000054_08953766_08966617.mRNA mRNA upstream 228052 8952134 ~ 8966617 (-) True CI01000054_08953766_08966617
CI01000054_09077309_09080163.mRNA mRNA upstream 352749 9076831 ~ 9080812 (-) True CI01000054_09077309_09080163
CI01000054_09218869_09223868.mRNA mRNA upstream 494550 9218632 ~ 9224119 (-) False CI01000054_09218869_09223868
CI01000054_09453616_09482480.mRNA mRNA upstream 728027 9452109 ~ 9482723 (-) True CI01000054_09453616_09482480
TU265381 other downstream 1549335 7171325 ~ 7171673 (-) True G233891
TU265088 other downstream 2066995 6649149 ~ 6654013 (-) True G233619
TU263564 other downstream 3511768 5206199 ~ 5209240 (-) True G232274
TU263226 other downstream 4048775 4672197 ~ 4672233 (-) True G231958
TU266788 other upstream 523957 9248039 ~ 9248538 (-) True G235216
TU266868 other upstream 759065 9485215 ~ 9485318 (-) False G235290
TU266867 other upstream 759270 9485215 ~ 9485318 (-) False G235290
TU266866 other upstream 759368 9485215 ~ 9485318 (-) False G235290
TU266865 other upstream 759402 9485215 ~ 9485318 (-) False G235290

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00028127 True 1558 mRNA 0.43 2 NC_007130.7 29798106 ~ 29800812 (+)
tiger barb (Puntius tetrazona) TU269698 True 321 lncRNA 0.46 1 NW_025048050.1 63757 ~ 64077 (+)
mexican tetra (Astyanax mexicanus) TU269698 True 1610 lncRNA 0.46 2 NC_035919.1 19696503 ~ 19699096 (+)