RNA id: CI01000054_08771624_08790335.mRNA



Basic Information


Item Value
RNA id CI01000054_08771624_08790335.mRNA
length 1136
RNA type mRNA
GC content 0.45
exon number 4
gene id CI01000054_08771624_08790335
representative True

Chromosome Information


Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 8771561 ~ 8790922 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GAATATAGCGGATGTGAGTGGAGAGAAAGGAAAGCAAGGGAGCAGGGTCAGGAATGCAGCAGCATGGGAGGCTGGGAAAAGGGGAGGCGGCTTCCAAGCACTTCCTGTGTTAGGAGGGAAGAATCCATCAACTATGAGACAGGAATCAGGGGAAGTCCTCCACTACTTTTGGCTCAGCTGCAGGAGCCTGTGGGAATACCCAAATACCCACAATCCCTGACCAACCAGACCAGCATCGCCAGCTGCCAGTGCCAAATGATTTCATTAAGAATCAATCTACTGGAGAACAAGGGACAAAAACACCCTAAACCGCATCCAGCGAGCTCTCACGGGCACTGTCTGGAACGGCTTACGCTAACGGTGCTGCAGACACTATACAACCCTCCACTGACTGCCTGTCAGAGTGAATACGAGGATATAAAAGTTGGTCAGCCGTACTTTGATAGACTGATCAGAACCCGAGGCGGGGAGATGGAGAAGGGAGCAGCGAGACAGAGGGATGGAGAAGGTGATCTTGCGTATCGCTTACATCTGGGAGCGGAACAATGACAGCTGCTGATGTCAAACAGGTGCTGAGCTTCAGGCCTGCAGGGAGGGAGGAGGGTGTGTCCGCAACCCACACACACTTACACTTAGAGACACTCAAATACAAGTCAAATGTGTGCAACTTCGAAAATTGGAAGACAAAATCCAACAAGGAATGCAAATTATGCTGTGGCCCAATAGAGTGTTAAGCTTGAGAAAGACAACGATGAGAAAGTTGTTTGGGTTTGTGGCTTTAATCGGGAACTAAGCTGACTAAATCAGGCCGGCAAAGGTTCAGCAGTGGCAAGGAAGTGTAATTTAAATGCAACGGGGAAAGTGTTTTAAGGGATTGACACTAAATGGCTATGTATAGAGGACCCAGAGGAAAGTTTTTGCTCAAAGTTTTCGCTGCAGCTCAAGAGGTTCTCGGTTATGTTTTATTTATGCATCAACCTTCTCAGAGGTTTCTCCAAAAATGCATGTAAATGAGACATTTGTTGAGATATAGTAAGTGTATAGAATAAAGAAATTAATTAGGATAGTATAGCTCAGATTATTTAAGAATTTAATTACTTAAAAGGAAAAAGTCTTTTAGTTAAAACATTAAACAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU266029 lncRNA upstream 134397 8636936 ~ 8637164 (+) True G234495
TU266024 lncRNA upstream 151333 8619942 ~ 8620228 (+) True G234490
TU266016 lncRNA upstream 173384 8597970 ~ 8598177 (+) True G234482
TU265983 lncRNA upstream 198468 8572885 ~ 8573093 (+) True G234452
TU265964 lncRNA upstream 209754 8561597 ~ 8561807 (+) True G234433
TU266112 lncRNA downstream 30812 8821734 ~ 8822062 (+) True G234577
TU266140 lncRNA downstream 89427 8880349 ~ 8880654 (+) True G234602
TU266144 lncRNA downstream 141451 8932373 ~ 8932635 (+) True G234606
TU266124 lncRNA downstream 183087 8974009 ~ 8974677 (+) False G234588
TU266125 lncRNA downstream 183471 8974393 ~ 8974677 (+) True G234588
CI01000054_08725294_08727378.mRNA mRNA upstream 43731 8725164 ~ 8727830 (+) True CI01000054_08725294_08727378
CI01000054_08704697_08709175.mRNA mRNA upstream 62212 8704697 ~ 8709349 (+) True CI01000054_08704697_08709175
CI01000054_08695322_08702750.mRNA mRNA upstream 68252 8695322 ~ 8703309 (+) True CI01000054_08695322_08702750
CI01000054_08675009_08686170.mRNA mRNA upstream 84882 8675009 ~ 8686679 (+) True CI01000054_08675009_08686170
CI01000054_08485645_08496381.mRNA mRNA upstream 274696 8485428 ~ 8496865 (+) True CI01000054_08485645_08496381
CI01000054_08908112_08917294.mRNA mRNA downstream 117190 8908112 ~ 8917595 (+) True CI01000054_08908112_08917294
CI01000054_08969979_08973590.mRNA mRNA downstream 179057 8969979 ~ 8973666 (+) True CI01000054_08969979_08973590
CI01000054_08975450_08984634.mRNA mRNA downstream 184437 8975359 ~ 8985175 (+) True CI01000054_08975450_08984634
CI01000054_09151300_09164780.mRNA mRNA downstream 359863 9150785 ~ 9164938 (+) True CI01000054_09151300_09164780
CI01000054_09232327_09233391.mRNA mRNA downstream 441077 9231999 ~ 9234242 (+) True CI01000054_09232327_09233391
TU264679 other upstream 441973 8305937 ~ 8306053 (+) True G233242
TU264744 other upstream 466612 8304599 ~ 8304949 (+) True G233306
TU264435 other upstream 1161668 7567523 ~ 7609893 (+) True G233024
TU264264 other upstream 1883058 6887912 ~ 6888503 (+) False G232870
TU267167 other downstream 1597214 10388136 ~ 10392378 (+) True G235560
TU267998 other downstream 2774054 11564976 ~ 11565121 (+) True G236317
TU268596 other downstream 2842054 11632976 ~ 11634064 (+) True CI01000054_11633235_11635069
TU268594 other downstream 2857057 11647979 ~ 11649025 (+) False CI01000054_11648262_11648786
TU268595 other downstream 2857057 11647979 ~ 11649025 (+) True CI01000054_11648262_11648786

Expression Profile