RNA id: CI01000054_09483912_09484282.mRNA


Basic Information

Item Value
RNA id CI01000054_09483912_09484282.mRNA
length 471
RNA type mRNA
GC content 0.48
exon number 1
gene id CI01000054_09483912_09484282
representative False

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 9483147 ~ 9484282 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGTTGACACCATGGCACCACTGTTGCTCCCTTGTCTTTTTGGTTCCTTGACTCGGCAGTTGTCCCAAGTTGCCAGATGTGCTGCTTTCGGCTCCTTACCTGCAGTAGGTGCACAGAGATGTATCTCCACCATCACAGCTGCAACCATGCAATTTAGGAGATTCGTCAACCCAATGTGCAAGCCTCACGCGGCTTTCCTCTCACCCCTGCTTGGACAGTGCCAGCAGCTCCTGTGTGTTCAGCCATCTGCTGGCATGAAGACAAAAACAGCTCTTAAAAGACGCTGTAAAGACTGCTTTTTCGTCCGCCGTCGTGGAAGGTTGTTTGTTTTTTGCAAATCTCACCCCAGACACAAGCAGCGGCAGGGGTGAATTAATTGAGACCTCAATGTGTGTTTTCAAATGAGGACTTGAGAATCACTTGTCTTGATCGGTGTATTGAGCATGTAAAGATCATAGAGTTTCTAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU266891 lncRNA downstream 41961 9437469 ~ 9441851 (-) True G235308
TU266878 lncRNA downstream 83246 9400361 ~ 9400566 (-) True G235298
TU266822 lncRNA downstream 167014 9316532 ~ 9316798 (-) True G235250
TU266816 lncRNA downstream 181108 9302438 ~ 9302704 (-) True G235244
TU266811 lncRNA downstream 190420 9292830 ~ 9293392 (-) True G235239
TU266934 lncRNA upstream 42566 9526848 ~ 9527267 (-) True G235350
TU266952 lncRNA upstream 72482 9556764 ~ 9559903 (-) True G235368
TU267183 lncRNA upstream 92312 9576594 ~ 9576876 (-) True G235575
TU267193 lncRNA upstream 98140 9582422 ~ 9664231 (-) True G235582
TU267203 lncRNA upstream 103777 9588059 ~ 9657253 (-) True G235591
CI01000054_09453616_09482480.mRNA mRNA downstream 1089 9452109 ~ 9482723 (-) True CI01000054_09453616_09482480
CI01000054_09218869_09223868.mRNA mRNA downstream 259693 9218632 ~ 9224119 (-) False CI01000054_09218869_09223868
CI01000054_09077309_09080163.mRNA mRNA downstream 403000 9076831 ~ 9080812 (-) True CI01000054_09077309_09080163
CI01000054_08953766_08966617.mRNA mRNA downstream 517195 8952134 ~ 8966617 (-) True CI01000054_08953766_08966617
CI01000054_08937312_08942587.mRNA mRNA downstream 541225 8937312 ~ 8942587 (-) True CI01000054_08937312_08942587
CI01000054_09488559_09488870.mRNA mRNA upstream 3994 9488276 ~ 9488870 (-) True CI01000054_09488559_09488870
CI01000054_09495785_09497239.mRNA mRNA upstream 11168 9495450 ~ 9497682 (-) True CI01000054_09495785_09497239
CI01000054_09531778_09544007.mRNA mRNA upstream 47228 9531510 ~ 9544510 (-) True CI01000054_09531778_09544007
CI01000054_09650064_09651286.mRNA mRNA upstream 165525 9649807 ~ 9651286 (-) True CI01000054_09650064_09651286
CI01000054_09686420_09705911.mRNA mRNA upstream 201765 9686047 ~ 9705911 (-) True CI01000054_09686420_09705911
TU266788 other downstream 235274 9248039 ~ 9248538 (-) True G235216
TU265381 other downstream 2312139 7171325 ~ 7171673 (-) True G233891
TU265088 other downstream 2829799 6649149 ~ 6654013 (-) True G233619
TU263564 other downstream 4274572 5206199 ~ 5209240 (-) True G232274
TU263225 other downstream 4811579 4672197 ~ 4672233 (-) True G231958
TU267307 other upstream 379039 9863321 ~ 9867058 (-) False CI01000054_09864693_09866871
TU267309 other upstream 379039 9863321 ~ 9867212 (-) False CI01000054_09864693_09866871
TU267308 other upstream 379116 9863398 ~ 9867058 (-) True CI01000054_09864693_09866871
TU268158 other upstream 1319589 10803871 ~ 10816186 (-) True G236458
TU268159 other upstream 1319589 10803871 ~ 10815565 (-) False G236458

Expression Profile