RNA id: CI01000054_09531778_09544007.mRNA



Basic Information


Item Value
RNA id CI01000054_09531778_09544007.mRNA
length 1299
RNA type mRNA
GC content 0.47
exon number 5
gene id CI01000054_09531778_09544007
representative True

Chromosome Information


Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 9531510 ~ 9544510 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGATTGTCTCAGCATAGGTCACTTGAAGGGGCACCCGCTCTCCCTCTCTCCTTACTCTGCCCAGCCCTGCTCTGAGTGCCTAGTAGGACAGATTCCTGCTCTCTTCCTCCTCTTATTCTTATTCTTTTCCCAGTGTCTAACCACACAGGTCTTTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGGCACCTCGTAAAACAGCTCTATCTAATTGCTGCCGTTGGCTTTTTGGCAGTGTGTAGAGAGTCTGTCTCTGAGGAATAGAATGAGGCTGTGTTTAAACTGTGCAAACACACACATTTGTGTCAGTGAGGGGAGGGTCTACCGCATTTACTGCCCTCAGGGCTTCTAGAGGGAAGAGCTCAGCAGGTCTGTCTGAAGTTCAGCGCATTATCACCTTCTCTTCTCTCCCACCGCTACAACAGCACCTCCTAATCCACTTCATCCACTCATGATCTAGTGCCGCAGTATGTGAGGGTATGGGCTATATTTCAGAGTCATGTTATCTCATGTTTGAAGATCTGTCCATTTGCAGTCTATTCAGTTCATTCTCTTTGTCCAGTGGCATCACAGTCTGCATGGTGCTGTTTGTCGAGACGCTGAGCGCTCCGCAGAGAGGTCAAAGGTTTCACCCAGCTACTGTGTTCGGGTCACAGGGAGCTTGGCTTGGGGTCAGAGGTTGCTGGGGTTCAACCCAGCATAATAATGATATTGGCGGAGGTCAACAGTGCTTGGCTGCCATCATCACTAGCTTATTAACCCTGTGGCCCACAGAGATCCACACAAACACATCGTACAAGAGGCTCATTCAGGCCTCAGGAGTGCTGCACTTCAGTGGCAATCAGTTTACTAAAACGTCCACCTGTCAAAGTCAAGTACATCTGTACGCAATCTTTTGTTTTATGTGCTTTGTACTGAAACTAAAAGGCCCCCTGTCAACAGCAGCTCCGTTGCAAACAGCGCTTTATCAGATATTCCAGAGAACTCAATCTATTGCCTGCCCTTAGGTGATTTGTAATGGCTGATCATTGTCTATAATGCATAATACATTACTGCGGGTCCCCCGCTCCTATCAATTCAGCTCACTTCAAATGCCTCTGTCAGCCTATCTCACCCTTGAGCCAGTCCGGATGTATGAATAATGTGTTTAAAAAATCAATTGAAGGGATTGGGTCTTCCCTGTAGCATCTGTTTATCAACAGCGTCTTTAGAGGTACCAGATTCCCCCTGCCATCTTGAGGGAAAAGTGTGTGAAATAAGTTACGAGTAAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU266934 lncRNA downstream 4243 9526848 ~ 9527267 (-) True G235350
TU266891 lncRNA downstream 89659 9437469 ~ 9441851 (-) True G235308
TU266878 lncRNA downstream 130944 9400361 ~ 9400566 (-) True G235298
TU266822 lncRNA downstream 214712 9316532 ~ 9316798 (-) True G235250
TU266816 lncRNA downstream 228806 9302438 ~ 9302704 (-) True G235244
TU266952 lncRNA upstream 12254 9556764 ~ 9559903 (-) True G235368
TU267183 lncRNA upstream 32084 9576594 ~ 9576876 (-) True G235575
TU267193 lncRNA upstream 37912 9582422 ~ 9664231 (-) True G235582
TU267203 lncRNA upstream 43549 9588059 ~ 9657253 (-) True G235591
TU267253 lncRNA upstream 126288 9670798 ~ 9671024 (-) True G235641
CI01000054_09495785_09497239.mRNA mRNA downstream 33828 9495450 ~ 9497682 (-) True CI01000054_09495785_09497239
CI01000054_09488559_09488870.mRNA mRNA downstream 42640 9488276 ~ 9488870 (-) True CI01000054_09488559_09488870
CI01000054_09483912_09484282.mRNA mRNA downstream 47228 9483812 ~ 9484282 (-) False CI01000054_09483912_09484282
CI01000054_09453616_09482480.mRNA mRNA downstream 48787 9452109 ~ 9482723 (-) True CI01000054_09453616_09482480
CI01000054_09218869_09223868.mRNA mRNA downstream 307391 9218632 ~ 9224119 (-) False CI01000054_09218869_09223868
CI01000054_09650064_09651286.mRNA mRNA upstream 105297 9649807 ~ 9651286 (-) True CI01000054_09650064_09651286
CI01000054_09686420_09705911.mRNA mRNA upstream 141537 9686047 ~ 9705911 (-) True CI01000054_09686420_09705911
CI01000054_09812111_09813425.mRNA mRNA upstream 267348 9811858 ~ 9813501 (-) True CI01000054_09812111_09813425
CI01000054_09831831_09832148.mRNA mRNA upstream 287248 9831758 ~ 9832148 (-) True CI01000054_09831831_09832148
CI01000054_09841097_09848347.mRNA mRNA upstream 296504 9841014 ~ 9848892 (-) True CI01000054_09841097_09848347
TU266869 other downstream 46123 9485215 ~ 9485387 (-) True G235290
TU266868 other downstream 46192 9485215 ~ 9485318 (-) False G235290
TU267307 other upstream 318811 9863321 ~ 9867058 (-) False CI01000054_09864693_09866871
TU267309 other upstream 318811 9863321 ~ 9867212 (-) False CI01000054_09864693_09866871
TU267308 other upstream 318888 9863398 ~ 9867058 (-) True CI01000054_09864693_09866871
TU268158 other upstream 1259361 10803871 ~ 10816186 (-) True G236458
TU268159 other upstream 1259361 10803871 ~ 10815565 (-) False G236458

Expression Profile