RNA id: TU267307


Basic Information

Item Value
RNA id TU267307
length 1928
RNA type TUCP
GC content 0.41
exon number 3
gene id CI01000054_09864693_09866871
representative False

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 9863321 ~ 9867212 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCGAGGAGTGATTAGACTAGTGCAAATTCATCTCATGCATTCATCACAGATTCACATAGCGTCTAGCTCGACATTCTGACACGACAACCGACAACTGAATATTTGTTTTTTAATATTCTCTAAATTGAGACCAGACTTTCGTCGATCGAGCGCCTCTGGGAAGGTTTATTCAGGTTTCATCAGTGCTATGGCGGAGGTACAACGTACATCGAGTGAGACGATAACGGAGACCGTTCAGACGGGCACACCACCTCCACCGCAGCAGGAGGGCAGAAGCTTGACCATCAAGCTCAGGAAAAGGAAGACGGAGAAGAAAGTGGAGTGGTCCAGTGACACGGTGGACAATGAACATCTAGGCCGGAGGTCTTCAAAGTGTTGCTGTATTTACGAGAAGCCACGACAGTTCGGCGAATCTTCCTCGGAAAGCGAGGGGGATGACGAGGAAGGCTGCGGAAGTGCGCACTGCGTTCTGGGACATGGGAGAAGAGGCCATGGACAGAGGGAGGGCGGAGGGACCACAGCGCCACCTAGCTCTGGGGGAACAAACCCTCACTAGAAGATAATGGGAGTCTTTTTGGAGCAAAGGGTAACGGGCGGCACTACATTCATAATCCCTCATCCTCACTCACACTGAATTACATCACACCATCACTGGGTGTCGAAAGCTTTTTGATGAATGAAAGCTTGTAGAGCAAAGCAATGTGATTCGTTTTCCTCGTGGTCATTAGTGTGATGACTTTGGGAAGACTTAACTTTTTTTGCGATCTGAATGCTGCGGAAAATTGATATTTGTTGTACATAGGACATTGGTTTTTATTTCTTTTTGTAAAATCAATATTTATTTGTTTGTGTTTAACAACTTCATTTTACCAGTTCTGTATCCACAAACAATATTTTAATTAATTAAAAACCTTCAAATATAATTCGGGAAGGTTTATACCTCCTTGCGAATTTAAAAGGAATAAATGCAGTATAAAAAAAAGGAATTTTATATCAAATATAATTTGCCTTGCTGTGTCACAATTCTAGCAGCAGTATTTCTTCATATCACTTTATCACTTCAGGAAATTCAAGCGTAGTAAATGTTGTGTGCTATAGTGAATTCAATAAATGAGATTTCAGGAACTCAACCTTTTTGAATATAGTTACAAGGGTGCATTAAATCATCTCCGTTAGTTTTCATAAGTTTGATTGAGATCTAGTGAGACTCCCCTCAGACAATCAGGCTAGTAAGAGACTCAGCATGTACATACAAACACATTGTGTTTAAGACGTAGTAAAGTGGACTGAGAAACATCTGAATTCATTCTGAATGCGAGGTGAGAATGGCACTTTGATCATTACCCAAAACTGAAACAGCAGCAGTGAAATTAAACGGTAGGATACTGATCTGAAAATGTGTAGATTTGGCAATTATCCTTTCATTCTCATGCTTTACATGAAATACAGGGGAAAATGTTTTGGTGTGTGTGATTGAGAAGATCACCCTTTGACGTGTAAGGTGCCTCATGTCATCCTGATCACTATGGCTGCTTTTATTTAGCAGAAATTGGTATAAAATCCAACTATTAGTGGGAGAGGTGCATGCTGTCAGCATGGTGTATACAGTAGTAGTTAGACTTGAGCTTTAAGGACTGATTACATGTGGTTATAAAGAACACGGGAAGGTGCATGACTGAATGCTGGCCAAGACCAAAATGCACATAGCATCATCTCTCCACTGATTTCAGATACAGTTTACAGTTGATTCCCATCAGGACCATCACATCAGTCACCTGTATCCCAGCATTCACATGCATCTGTCGTCCCTTTACTGTGAACGCACCTGTATGTACATAGGTCATAGAGTGGATTTAACATGAATAAACAGATGTTAAATTATGTTGTTTATATCTATTAAATGCTTAATGGCAACCTGATTGTGTCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU267387 lncRNA downstream 9797 9853261 ~ 9853524 (-) True G235750
TU267340 lncRNA downstream 34152 9821113 ~ 9829169 (-) True G235706
TU267374 lncRNA downstream 67326 9793671 ~ 9795995 (-) True G235737
TU267263 lncRNA downstream 166062 9696958 ~ 9697259 (-) True G235651
TU267261 lncRNA downstream 185701 9677283 ~ 9677620 (-) True G235649
TU267398 lncRNA upstream 24722 9891780 ~ 9892046 (-) True G235761
TU267401 lncRNA upstream 62094 9929152 ~ 9936746 (-) True G235764
TU267411 lncRNA upstream 79066 9946124 ~ 9946394 (-) True G235772
TU267431 lncRNA upstream 108722 9975780 ~ 9976208 (-) True G235790
TU267470 lncRNA upstream 167095 10034153 ~ 10038735 (-) True G235828
CI01000054_09841097_09848347.mRNA mRNA downstream 14429 9841014 ~ 9848892 (-) True CI01000054_09841097_09848347
CI01000054_09831831_09832148.mRNA mRNA downstream 31173 9831758 ~ 9832148 (-) True CI01000054_09831831_09832148
CI01000054_09812111_09813425.mRNA mRNA downstream 49820 9811858 ~ 9813501 (-) True CI01000054_09812111_09813425
CI01000054_09686420_09705911.mRNA mRNA downstream 157410 9686047 ~ 9705911 (-) True CI01000054_09686420_09705911
CI01000054_09650064_09651286.mRNA mRNA downstream 212035 9649807 ~ 9651286 (-) True CI01000054_09650064_09651286
CI01000054_09914091_09916621.mRNA mRNA upstream 46312 9913370 ~ 9916621 (-) True CI01000054_09914091_09916621
CI01000054_10082299_10083956.mRNA mRNA upstream 214855 10081913 ~ 10084102 (-) True CI01000054_10082299_10083956
CI01000054_10124266_10128452.mRNA mRNA upstream 256996 10124054 ~ 10128452 (-) True CI01000054_10124266_10128452
CI01000054_10162998_10168490.mRNA mRNA upstream 295909 10162967 ~ 10169049 (-) True CI01000054_10162998_10168490
CI01000054_10222056_10229581.mRNA mRNA upstream 354888 10221946 ~ 10229581 (-) True CI01000054_10222056_10229581
TU266869 other downstream 377934 9485215 ~ 9485387 (-) True G235290
TU266868 other downstream 378003 9485215 ~ 9485318 (-) False G235290
TU266867 other downstream 378003 9485215 ~ 9485318 (-) False G235290
TU266866 other downstream 378003 9485215 ~ 9485318 (-) False G235290
TU266865 other downstream 378003 9485215 ~ 9485318 (-) False G235290
TU268158 other upstream 936813 10803871 ~ 10816186 (-) True G236458
TU268159 other upstream 936813 10803871 ~ 10815565 (-) False G236458
TU268160 other upstream 936813 10803871 ~ 10816162 (-) True G236458
TU268162 other upstream 1004046 10871104 ~ 10881216 (-) True CI01000054_10872970_10881017
TU268494 other upstream 1418136 11285194 ~ 11291240 (-) False G236748

Expression Profile