RNA id: CI01000054_10751348_10752449.mRNA


Basic Information

Item Value
RNA id CI01000054_10751348_10752449.mRNA
length 403
RNA type mRNA
GC content 0.42
exon number 2
gene id CI01000054_10751348_10752449
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 10751295 ~ 10752511 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTATAAATCGAGCCCATCATCCTGGACGGGCTGAAAAGTTTCAAGCGAGCGAAATGAACCGGAGCTTTAATAATAAATCGCAATCTTTGCGTAGCTTGAACATGAACGCTGTGGAAGTGAAAAGCAAGTGGAGCCATAAAGGCTTTTCATACACAGTAATTGTTCAATTTGCCTGGGGAAATATCCGACAAAGCTTCAACCGACCCTTCACAAATAGAAATAACTCTATATCTGTCACCGCTCGTACTAATGGTGGTGTGGACTATACATCTGTTGCAGCCAAGCTGATGGAGACAGTATCTGTCAAAGCGCTGTCATTGAGACCCATTGGAGCTGGATGATTCATTACATCTCCGCTTTTCCTTTTGAGACGTCTGTCACTTTATTCACTCTATATTCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU267788 lncRNA upstream 12411 10738567 ~ 10738884 (+) True G236128
TU267775 lncRNA upstream 21968 10729053 ~ 10729327 (+) True G236115
TU267715 lncRNA upstream 138643 10607535 ~ 10608326 (+) True G236055
TU267693 lncRNA upstream 160098 10589074 ~ 10591197 (+) True G236036
TU267680 lncRNA upstream 195059 10555820 ~ 10556236 (+) True G236023
TU267809 lncRNA downstream 94381 10846892 ~ 10847093 (+) True G236149
TU267810 lncRNA downstream 97582 10850093 ~ 10850307 (+) True G236150
TU267841 lncRNA downstream 130167 10882678 ~ 10883126 (+) True CI01000054_10884460_10894800
TU267861 lncRNA downstream 174452 10926963 ~ 10949688 (+) False G236195
TU267862 lncRNA downstream 189099 10941610 ~ 10949688 (+) True G236195
CI01000054_10601018_10615939.mRNA mRNA upstream 135341 10600974 ~ 10615954 (+) False CI01000054_10601018_10615939
CI01000054_10508500_10513655.mRNA mRNA upstream 237438 10508500 ~ 10513857 (+) True CI01000054_10508500_10513655
CI01000054_10467566_10471168.mRNA mRNA upstream 279818 10467566 ~ 10471477 (+) True CI01000054_10467566_10471168
CI01000054_10420267_10420899.mRNA mRNA upstream 329206 10420156 ~ 10422089 (+) True CI01000054_10420267_10420899
CI01000054_10246428_10247072.mRNA mRNA upstream 504172 10246428 ~ 10247123 (+) True CI01000054_10246428_10247072
CI01000054_10759809_10795763.mRNA mRNA downstream 7298 10759809 ~ 10795780 (+) True CI01000054_10759809_10795763
CI01000054_10797926_10802248.mRNA mRNA downstream 45339 10797850 ~ 10802958 (+) True CI01000054_10797926_10802248
CI01000054_10805413_10815170.mRNA mRNA downstream 52902 10805413 ~ 10815359 (+) True CI01000054_10805413_10815170
CI01000054_10884460_10894800.mRNA mRNA downstream 129073 10881584 ~ 10894954 (+) False CI01000054_10884460_10894800
CI01000054_10905705_10908903.mRNA mRNA downstream 150037 10902548 ~ 10909056 (+) True CI01000054_10905705_10908903
TU267167 other upstream 358917 10388136 ~ 10392378 (+) True G235560
TU264679 other upstream 2421707 8305937 ~ 8306053 (+) True G233242
TU264744 other upstream 2446346 8304599 ~ 8304949 (+) True G233306
TU264435 other upstream 3141402 7567523 ~ 7609893 (+) True G233024
TU264265 other upstream 3862792 6888114 ~ 6888503 (+) True G232870
TU267998 other downstream 812465 11564976 ~ 11565121 (+) True G236317
TU268596 other downstream 880465 11632976 ~ 11634064 (+) True CI01000054_11633235_11635069
TU268594 other downstream 895468 11647979 ~ 11649025 (+) False CI01000054_11648262_11648786
TU268595 other downstream 895468 11647979 ~ 11649025 (+) True CI01000054_11648262_11648786
TU268664 other downstream 1061177 11813688 ~ 11816475 (+) True G236874

Expression Profile