RNA id: TU268162


Basic Information

Item Value
RNA id TU268162
length 2440
RNA type TUCP
GC content 0.40
exon number 2
gene id CI01000054_10872970_10881017
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 10871104 ~ 10881495 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGAAGAAGCCTGCATGTACGGTTGGATAATCAACAGTGTAATGTACATATGACCTTTTATAAACTATAATATCAGATCGTTTCGTCTCTTTCATGAGCTATGGTTTTTGGGCTGGTGCACTAACACTGCGTTGATGTGTTCAAAGAGGACGCACTTATCGCTGTATCATATCTAGAGTTGACTGTCAGATTGTGAAGTTATGGCACATTCAGCACATGTATCAGCGGTTCGGTCGTTGTATAAGAGAATCCTGTTACTGCACCGCTTCCTGCCCATAGACCTGCGGGCTCTGGGTGATCAGTATGTGAAAGATGAATTCAGAAGAAACAAGACTGCATCACGGAAAGAGGAAGTCACACGCTTCATGACAGAATGGCAGAACTACAAAGACACCCTACAGACACAGGTGCTGGAAACGATGGGAAGCAAGAAGTTGGTATTTGGTGCTGATTTACCGGAAGAGAAACTCAAAGACTTTCAAGACGAGCAGATCGGGCAGCTTTACGAGCTTATGCTTGAGTCCACAAAAACCAACCGGCAGTTTGATATTCAAGAGGAGGGAACTCCAAAGTAACACCACCCGAAGGGGTAGCCAGCCCGACGGGACATAGTTTGACTTATAAAATACTTTTCTTCATAGCCAAGACTGATGATTACATTAAAATGCTACAAAGAGTCTTCATTGTTGCTGCTTATTAGTGTTTCTGAGGATAAAAGGAAAAAAATAAAATTGGCTTTGGGATCAACAGTTATAATAAGATGTTTGAGCTTTAGTGACAGTGCCACCTCTGGTCAAAATGTCATTGCATTGGGAGATATCCCACCCTGCAAAAACTAATTTCTGGGAGATGGCCAACCCGATCTCACGGCAATTCCTACATATTTTACGAGGTGGCTAATTCGTACGGATTCGTACGACCTCACTGCTAAATCGTACGAATTATACAAGTTGCCAAATTCATATGAATTCGTACAAATGACCTACCCTTAACCCCGCCGCTAAACCCACCCATCACTGGGGTTTAGACAAATCGTATGAATTTGTACAAGTGAGGTCATACGAATTAGCCACCTCGTAAAATACGTACGAATTGGTCGTGAGATAGCGTTGAATAATACCAGGTGTAATGGTAATACGTCTTGGCTGACCACTTGTAATTGGTTCCCTGGAAAAAAATACATCTTAATACCAGGTGGAAACAGGCTTTCTCTCGCTCAATTTATGGGATATTGTATAAAAGCCGCTATCAATATGCAGGAGACTCCCAGACCTTCCGGGAGAGGTGGGATGGCTGCATTGGCTGAAAATTTGGCTTAAATTCGCTTTTTTTTTTCTCTCATTCTGCCGTTTTGAACAGATTTGCAATAGTTTTGTTTTTCATGGCAATTCCTTCAAAGTTTGTCCAATCTTCTTCAGGCCAAATTGTATTTTTCTTGGTTTTCAAAGCTAATTGACCTCTAACACACCAAAAAAAGGTGATGTCAAGGATGCTAAACAGGTAGTGAGGCTTTTTATCGGCAGTGGTTTAACATATTGAAAGTTTGTTATTAGACCCTGCCTTATTTTTATCAGCACTGCGGCTCTGTAGTTATTGGGTACATTAACTTGTAAGAACAAAACCACGTTCTGTATGCTAATCCCCTTAGGTCTGTCACTCAGAAGTAAAAAAAATGTAGTCAAATTGGCTTTATTCAGAGCAGCGCCATTACAAGTATGAAAGTGAGGTTGTGAGAGATAGACTTACCGCGTTTTCAATGGCATCCGCTATAAAAAGCTGTATAAAGCTCCTAAATAACTTATAAGTTTCCACAGCTCATATTGTGTGGGTTGTTTTGTCTTCTGAAATTTCTCTGAAAGATATTTTTCCAGTGTTTTATCAGCAGAAAAATCCAAAAACACATTAAATAACAGCATAACCCACTGAAGAGGTGCATGTCTATCCTTCACAGACTCTTTCATTACCATTAAAAATTAAAGATGGTGCTGCTGTGAATAAGGTCTATTGGCCTGACAGTGAAACTAAAGCGCTTTTCTTCATCCACATGGATGAGGAGAATGGCACGACGTTTAATGGTCATTTCCGATGATTGACATCAGAGTTTACCGGTATTTTGGTACTGATGTGTGAATGGTATCTTACCAGTGAAAAGACGAAACGCTGTTGCTTCTGTGAACGGCACATTTTATGTATTTACTGGAAAAGTCGTAATTTTTGGTAATTTATTGGGATTACTGTGTGAAAAGTGCTATTCCCTAATAGCACATGTACATCACAGAGATTTTACATCTGTAAGATGCACTATTGTTTTTTAGAGTGTTTGCTCTTCTGTAATATGTCCCTAAGACGTTTCTTCTAAGACTGTTTTTTCTTTTTTTTTCAGAGAGATTTATCAGACATTTGTACTTAAAAGATGTTTTCCAGATTAAATGCTCTTTAGC

Function

GO:

id name namespace
GO:0005759 mitochondrial matrix cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268246 lncRNA downstream 3106 10867787 ~ 10867998 (-) True G236542
TU268237 lncRNA downstream 22549 10848288 ~ 10848555 (-) True G236533
TU268210 lncRNA downstream 46331 10772245 ~ 10824773 (-) True G236506
TU268157 lncRNA downstream 65435 10803871 ~ 10805669 (-) False G236458
TU268183 lncRNA downstream 132256 10738542 ~ 10738848 (-) True G236480
TU268256 lncRNA upstream 13715 10894931 ~ 10895319 (-) True G236551
TU268259 lncRNA upstream 17251 10898467 ~ 10898951 (-) True G236554
TU268263 lncRNA upstream 21916 10903132 ~ 10904729 (-) True G236555
TU268290 lncRNA upstream 83082 10964298 ~ 10966446 (-) False G236570
TU268291 lncRNA upstream 83082 10964298 ~ 10966446 (-) False G236570
CI01000054_10817235_10819181.mRNA mRNA downstream 51742 10817142 ~ 10819362 (-) False CI01000054_10817235_10819181
CI01000054_10645438_10672411.mRNA mRNA downstream 198423 10645142 ~ 10672681 (-) True CI01000054_10645438_10672411
CI01000054_10518872_10568706.mRNA mRNA downstream 302398 10518872 ~ 10568706 (-) True CI01000054_10518872_10568706
CI01000054_10389232_10412773.mRNA mRNA downstream 458331 10389232 ~ 10412773 (-) True CI01000054_10389232_10412773
CI01000054_10269355_10363708.mRNA mRNA downstream 506955 10268720 ~ 10364149 (-) True CI01000054_10269355_10363708
CI01000054_10910820_10938477.mRNA mRNA upstream 29158 10910374 ~ 10938477 (-) True CI01000054_10910820_10938477
CI01000054_10949424_10950271.mRNA mRNA upstream 68103 10949319 ~ 10951456 (-) True CI01000054_10949424_10950271
CI01000054_11097818_11099299.mRNA mRNA upstream 216492 11097708 ~ 11099334 (-) True CI01000054_11097818_11099299
CI01000054_11184013_11193925.mRNA mRNA upstream 302514 11183730 ~ 11193925 (-) True CI01000054_11184013_11193925
CI01000054_11209592_11214961.mRNA mRNA upstream 326833 11208049 ~ 11215113 (-) True CI01000054_11209592_11214961
TU268158 other downstream 51759 10803871 ~ 10816186 (-) True G236458
TU268159 other downstream 51759 10803871 ~ 10815565 (-) False G236458
TU268160 other downstream 51759 10803871 ~ 10816162 (-) True G236458
TU267309 other downstream 1003892 9863321 ~ 9867212 (-) False CI01000054_09864693_09866871
TU267307 other downstream 1004046 9863321 ~ 9867058 (-) False CI01000054_09864693_09866871
TU268494 other upstream 403978 11285194 ~ 11291240 (-) False G236748
TU268495 other upstream 403978 11285194 ~ 11295784 (-) False G236748
TU268938 other upstream 897674 11778890 ~ 11781847 (-) False CI01000054_11780397_11781842
TU268937 other upstream 898241 11782349 ~ 11782484 (-) True G237082

Expression Profile