RNA id: TU267841


Basic Information

Item Value
RNA id TU267841
length 285
lncRNA type sense_over
GC content 0.42
exon number 2
gene id CI01000054_10884460_10894800
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 10881584 ~ 10894954 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCGATGACGCATATGATTTTCGCTTCTCCCCCCAAAAAATATCCTGTGTGTACCAGAGTGGGAGAAGCTGTCGCCCCGTTGCTCCACTGATTATTTCCCTTAATTACAGGTATGTCGTTCAATCAGTTCTGTTTCAAAAAGAAAAGAGATTTAGTTGACTGATAATGAATGTATATGGTACAGAGAGTGTGTTATGGGAGAAAGAAACGGATTTAATTGTTTATGCTGTCTGTGACGCACTTTGTGCGGCCTGCATATGGTACGGTGCTGAATATATCCCATGTT

Function

GO:

id name namespace
GO:0016267 O-glycan processing, core 1 biological_process

KEGG:

id description
K00731 C1GALT1; glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU267810 lncRNA upstream 32371 10850093 ~ 10850307 (+) True G236150
TU267809 lncRNA upstream 35585 10846892 ~ 10847093 (+) True G236149
TU267788 lncRNA upstream 143794 10738567 ~ 10738884 (+) True G236128
TU267775 lncRNA upstream 153351 10729053 ~ 10729327 (+) True G236115
TU267715 lncRNA upstream 270026 10607535 ~ 10608326 (+) True G236055
TU267861 lncRNA downstream 43837 10926963 ~ 10949688 (+) False G236195
TU267862 lncRNA downstream 58484 10941610 ~ 10949688 (+) True G236195
TU267840 lncRNA downstream 131005 11014131 ~ 11075365 (+) True G236176
TU267890 lncRNA downstream 266683 11150613 ~ 11151616 (+) True G236220
TU267919 lncRNA downstream 343600 11226726 ~ 11233234 (+) True G236249
CI01000054_10805413_10815170.mRNA mRNA upstream 67319 10805413 ~ 10815359 (+) True CI01000054_10805413_10815170
CI01000054_10797926_10802248.mRNA mRNA upstream 79720 10797850 ~ 10802958 (+) True CI01000054_10797926_10802248
CI01000054_10759809_10795763.mRNA mRNA upstream 86898 10759809 ~ 10795780 (+) True CI01000054_10759809_10795763
CI01000054_10751348_10752449.mRNA mRNA upstream 130167 10751295 ~ 10752511 (+) True CI01000054_10751348_10752449
CI01000054_10601018_10615939.mRNA mRNA upstream 266724 10600974 ~ 10615954 (+) False CI01000054_10601018_10615939
CI01000054_10905705_10908903.mRNA mRNA downstream 19422 10902548 ~ 10909056 (+) True CI01000054_10905705_10908903
CI01000054_10964288_10964566.mRNA mRNA downstream 81162 10964288 ~ 10964649 (+) True CI01000054_10964288_10964566
CI01000054_10985849_11004067.mRNA mRNA downstream 100962 10984088 ~ 11004096 (+) True CI01000054_10985849_11004067
CI01000054_11032632_11091062.mRNA mRNA downstream 149506 11032632 ~ 11091062 (+) True CI01000054_11032632_11091062
CI01000054_11126599_11136327.mRNA mRNA downstream 241495 11124621 ~ 11137242 (+) True CI01000054_11126599_11136327
TU267167 other upstream 490300 10388136 ~ 10392378 (+) True G235560
TU264679 other upstream 2553090 8305937 ~ 8306053 (+) True G233242
TU264744 other upstream 2577729 8304599 ~ 8304949 (+) True G233306
TU264435 other upstream 3272785 7567523 ~ 7609893 (+) True G233024
TU264265 other upstream 3994175 6888114 ~ 6888503 (+) True G232870
TU267998 other downstream 681850 11564976 ~ 11565121 (+) True G236317
TU268596 other downstream 749850 11632976 ~ 11634064 (+) True CI01000054_11633235_11635069
TU268594 other downstream 764853 11647979 ~ 11649025 (+) False CI01000054_11648262_11648786
TU268595 other downstream 764853 11647979 ~ 11649025 (+) True CI01000054_11648262_11648786
TU268664 other downstream 930562 11813688 ~ 11816475 (+) True G236874

Expression Profile