RNA id: CI01000054_11280613_11285395.mRNA



Basic Information


Item Value
RNA id CI01000054_11280613_11285395.mRNA
length 1496
RNA type mRNA
GC content 0.45
exon number 5
gene id CI01000054_11280613_11285395
representative True

Chromosome Information


Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 11280613 ~ 11285395 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGGCCATGAAGGAAATGGTTATTGAAGTAAATGGGCTCCCTGACCACTACTCCAAAAATATGATGATTGACAAATTAACCATGCACTTTCTGAGGCGCAGTAACAAAGGAGGAGATGTTTTAACAGTGATTTATCCCACCTCCAACAAAGGCCAGGCTTATGTTGTCTTTGAATCAGCCGAAGTACCTGGGGTCTTGCAACACACACATGTTTTGATAGTGGAGAGTCAGTTTTACCCACTGGACATTAAAAAGGTGCATCAACCTCAGCTGGACATGCCAGCCGAAGCACTCCTCGAAATGAACACGTTCTCCAATCACAGAAAAATCCAAGAACTTCTTCATAGCCATGGCTTTCAGGTGTCAGAGACCAGCCCAGGACAGCTGCATTTGCAGGGTTCCTTTCTCAAGCTAAAACTCATCTATCCCAAACTTGTGCAGTTTCTGGCTCAAGAAACTCACCATCAAAGAGGAACACCTTCGCATTACACTAATGGCTACTCCTCTGTCTCCAGAGGTGAAAAAAGTGACTCCAGTGACTATGAATCCAGATCTAATTTCACATCGATGCGCACTCACAACAATGGCAACTCCGTATATGCTGAGGGCAGCAGCACATCTTCAGGAATAACCTCAAGATCCACAGAGTCCCAATACCGACAGGCATTCTTGCAGAATGCATCTCTACTGGATAGAAGCTCTAGCACAGAAAGTCCCTTTAGCAGTCCCTCCAGGATGTATGAGGATTCCCGCACAAGCGTTCAGCAGCGGAATCCCTCGTCTCCCAGGCAAAATGAGGAAATCAGTGATTCTGTGCGCACACAAGAAATAGACATGAACGCATGTGACGAAAGTCAGAAGAAATACATTATCCAGAAAGCGTACTCATTCCAAAAGATCTACAATGTTTTAATTAGAAAGGAAGGTAACATTATTAAAGTGGTGGGGTCATCAAAAGACAGTTATGAAGCAAAGCAAAAGCTTCTTGGCCGGGATGTTGACATTGCACTGCCTAAACGCATGGAGAGGAACATTTTGCGCCGCAGCAGCTCTTTGCCAAGACAAAAAACAAGGGCCAGAATGGAGAACCTAGACATAGATCAAATTCCAGCTACTGTTAGTAGCTTCTCTGCCTCACATTCCCAAACAGACTCTCAGCAAGCAAGCAAGCAAGAAGTTCAACAGGAAAGAGGTCGCCAGCCTTCTAAATCCACTGCACATAGCAGATCACAGAGCGGCTCTCGATTACAACACAGAAATCAAAAGAGTGTAAAGCAAGAACCACCAACCTCTGTTCAGCAGGATTTGACACCCTCTAGTGGAGTTCAGAAATCTAAACAAGGGCCACTACCTAAATTAAAAGCTGCTCTTTTTCCTGATAAAAGTAAAACTCCTGCAGGCATGGCGGAGCTGGAGGGCTTGGAGTTCGGAAAGTCAGACTTTGTGCTTCTAGATGAGGTCACTATGGAGCAGTTTATGGAGAATTTGAAGTTAAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU267892 lncRNA upstream 1608 11277411 ~ 11279005 (+) True G236222
TU267927 lncRNA upstream 36330 11244063 ~ 11244283 (+) True G236257
TU267919 lncRNA upstream 47379 11226726 ~ 11233234 (+) True G236249
TU267890 lncRNA upstream 128997 11150613 ~ 11151616 (+) True G236220
TU267840 lncRNA upstream 205248 11014131 ~ 11075365 (+) True G236176
TU267952 lncRNA downstream 10754 11296149 ~ 11297001 (+) True G236281
TU267982 lncRNA downstream 83700 11369095 ~ 11373596 (+) True G236305
TU268044 lncRNA downstream 222030 11507425 ~ 11507904 (+) True G236362
TU268060 lncRNA downstream 264209 11549604 ~ 11550696 (+) True G236373
TU268583 lncRNA downstream 311871 11597266 ~ 11597518 (+) True G236822
CI01000054_11171795_11178974.mRNA mRNA upstream 101504 11171731 ~ 11179109 (+) True CI01000054_11171795_11178974
CI01000054_11162176_11165636.mRNA mRNA upstream 114786 11160059 ~ 11165827 (+) True CI01000054_11162176_11165636
CI01000054_11154206_11157480.mRNA mRNA upstream 122783 11154129 ~ 11157830 (+) True CI01000054_11154206_11157480
CI01000054_11142387_11149427.mRNA mRNA upstream 130490 11141982 ~ 11150123 (+) False CI01000054_11142387_11149427
CI01000054_11126599_11136327.mRNA mRNA upstream 143371 11124621 ~ 11137242 (+) True CI01000054_11126599_11136327
CI01000054_11289604_11337266.mRNA mRNA downstream 4209 11289604 ~ 11337380 (+) True CI01000054_11289604_11337266
CI01000054_11409512_11412290.mRNA mRNA downstream 123859 11409254 ~ 11413131 (+) True CI01000054_11409512_11412290
CI01000054_11536181_11537063.mRNA mRNA downstream 249362 11534757 ~ 11537164 (+) True CI01000054_11536181_11537063
CI01000054_11564820_11568338.mRNA mRNA downstream 279425 11564820 ~ 11568450 (+) False CI01000054_11564820_11568338
CI01000054_11600741_11608257.mRNA mRNA downstream 315111 11600506 ~ 11608362 (+) False CI01000054_11600741_11608257
TU267167 other upstream 888235 10388136 ~ 10392378 (+) True G235560
TU264679 other upstream 2951025 8305937 ~ 8306053 (+) True G233242
TU264744 other upstream 2975664 8304599 ~ 8304949 (+) True G233306
TU264435 other upstream 3670720 7567523 ~ 7609893 (+) True G233024
TU264265 other upstream 4392110 6888114 ~ 6888503 (+) True G232870
TU267998 other downstream 279581 11564976 ~ 11565121 (+) True G236317
TU268596 other downstream 347581 11632976 ~ 11634064 (+) True CI01000054_11633235_11635069
TU268594 other downstream 362584 11647979 ~ 11649025 (+) False CI01000054_11648262_11648786
TU268595 other downstream 362584 11647979 ~ 11649025 (+) True CI01000054_11648262_11648786
TU268664 other downstream 528293 11813688 ~ 11816475 (+) True G236874

Expression Profile