RNA id: CI01000054_11464968_11474671.mRNA



Basic Information


Item Value
RNA id CI01000054_11464968_11474671.mRNA
length 1328
RNA type mRNA
GC content 0.44
exon number 7
gene id CI01000054_11464968_11474671
representative True

Chromosome Information


Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 11464394 ~ 11474702 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATTAGCATAGCCACGCCTCAAACTGACTGACATGGGCATTGAGAGTCAGGGCCCCACCCGCCCTGCAGGAAATCTGACGCCAAAGCAGGTGAAGACATTTCAGAATGTGGAGCCGAAGGCACTGGGGTCCATTCAGATCATTATTGCTGTCTTGTGCTTGTGTCTGAGCGTCACCATTCTTCAGCTCTATGAAGAGGTCCACTTCTCTCCTGATGTCATCGTTGTGGTAGTAATTGTTGCTCAGTTGCTTGTGTCTGGATCAATTTTAATCCATGCTGGAAGGTTCCCATCACTCTTTTGGGTGAAAGCCACACTGGTTGCTCACCTGGTCAGTGCAGCGTTTTCCACTGCTGTTCTTGGGCTGCTGTCCCGTCACCTGCCTTACCGTCAGGACACCTACCACTGTGAGCACTGCAGGAGACTGGAGATCTATGCTGTGCTCTTGATTGATGGCTTCTTGGCCACCTTGGTTCTGTTTCTGGTGGTGGAGTTGGCGATCTGTATTGTAACCATTTTATTTGGACTCAGTGCTCTGGCTAAAGCTGGCGTGAAGCTTCCTGGTTTTAGACAGCGTGCAGCTCAATCTCAGCCTGAGGCAGTCACCCCTAGCCAACCTCAGGTGGAGGTGGTGGTCTCAGAGGTGGAGCCTATGCCAGAGCGCATGCCTGAACCTCAATCTGAGCCAATAGAAGAAATCCCCAGCCCTCCCACTGAACCTCAAGTGGCCCCCATTGACTCCTTAACAGACGTTTGACACTTCATGCTCATGTGATCTGTATGTATATTGTAAGTAGGGGGGCTTTGGTGATCAGTGAGGTTTTAGCAGCAGTGGTTTTTATATTTTAGTGGTATATGAAATCGACACGATAGGGCTTTACAATATGCCATTATGCTTAAAGGGATGGTTCAACCAAAATTGAAAAATCTTCGTAATTATTCTTCCTTATCATTCCAAACCTTTAACACTTTCTTACAATGAAAGTGGATGGGCACCAGGGGTTGTCAAGCTCCACAAAGGACAAAAAAATCACCATAAAAGCAAAAACAACTTGTGCACTATATTCAAAGTTTTTTTTAAGTCATATAGTTTTGAGTGAGTAACAGGCATTTATATCATTATTCATTAAAAATCTTGCTTGACTGCTGTGGTCAACGTTCGCGTTCATTGTTTGTAAAAGTGCAACATTCTACTATTATTATGTCCTTGCATTCTAGAAAGAAACTTTTTTTTAAAGTTCTGCTTTTCAAAAGACATGAAAGTGAATGTTCATTTTTGGGTGAACTATCGCTTTAACATTGCATTAGCTTTACATTACATTACTATTAAA

Function


GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU268534 lncRNA downstream 31463 11334706 ~ 11432931 (-) True G236779
TU268471 lncRNA downstream 38927 11423835 ~ 11425467 (-) True G236725
TU268457 lncRNA downstream 51209 11409219 ~ 11413185 (-) False G236715
TU268459 lncRNA downstream 51209 11409219 ~ 11413185 (-) False G236715
TU268460 lncRNA downstream 51209 11409219 ~ 11413185 (-) True G236715
TU268480 lncRNA upstream 31839 11506541 ~ 11507903 (-) True G236734
TU268474 lncRNA upstream 50438 11525140 ~ 11527129 (-) True G236728
TU268477 lncRNA upstream 53708 11528410 ~ 11529232 (-) True G236731
TU268561 lncRNA upstream 66185 11540887 ~ 11541109 (-) True G236806
TU268562 lncRNA upstream 68552 11543254 ~ 11543538 (-) True G236807
CI01000054_11441495_11447523.mRNA mRNA downstream 16871 11441430 ~ 11447523 (-) True CI01000054_11441495_11447523
CI01000054_11387319_11406159.mRNA mRNA downstream 57324 11387319 ~ 11407070 (-) True CI01000054_11387319_11406159
CI01000054_11365718_11380961.mRNA mRNA downstream 83433 11365020 ~ 11380961 (-) False CI01000054_11365718_11380961
CI01000054_11354957_11355910.mRNA mRNA downstream 108206 11354640 ~ 11356188 (-) True CI01000054_11354957_11355910
CI01000054_11222307_11238293.mRNA mRNA downstream 224644 11222171 ~ 11239750 (-) True CI01000054_11222307_11238293
CI01000054_11480381_11493272.mRNA mRNA upstream 4082 11478784 ~ 11493272 (-) True CI01000054_11480381_11493272
CI01000054_11594619_11599264.mRNA mRNA upstream 119884 11594586 ~ 11599297 (-) True CI01000054_11594619_11599264
CI01000054_11699420_11703409.mRNA mRNA upstream 224264 11698966 ~ 11703732 (-) True CI01000054_11699420_11703409
CI01000054_11705281_11711296.mRNA mRNA upstream 229879 11704581 ~ 11711296 (-) True CI01000054_11705281_11711296
CI01000054_11724484_11731711.mRNA mRNA upstream 249293 11723995 ~ 11731711 (-) True CI01000054_11724484_11731711
TU268495 other downstream 168610 11285194 ~ 11295784 (-) False G236748
TU268494 other downstream 173154 11285194 ~ 11291240 (-) False G236748
TU268162 other downstream 583178 10871104 ~ 10881216 (-) True CI01000054_10872970_10881017
TU268159 other downstream 645049 10803871 ~ 10815565 (-) False G236458
TU268938 other upstream 304188 11778890 ~ 11781847 (-) False CI01000054_11780397_11781842
TU268937 other upstream 304755 11782349 ~ 11782484 (-) True G237082

Expression Profile