RNA id: CI01000054_11648262_11648786.mRNA



Basic Information


Item Value
RNA id CI01000054_11648262_11648786.mRNA
length 1537
RNA type mRNA
GC content 0.32
exon number 1
gene id CI01000054_11648262_11648786
representative False

Chromosome Information


Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 11647959 ~ 11649495 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATATAAAATACAGGTTAGAGAGGCAACTTATTCCATGACTCATTTTTGATGATCTCAGCAGTACATTTAATAGTAGGTAACTGAAAAAAATAATTCAATTAATCATATTATGATTTTAAAGAGAAAATTACATTTTAATATGCTTTTTCATTTTTTTAAAAAAAAAATGTTATTTGTTTTAAAAATAACAATATTGCAAATTTTATGAAGGTGTTATTGTTACAATTCTAGGCTATTGTGATATTAATTTTCACACCAATAATGATTTGACAGAAATATGGAAAATTTCTTATCTCATTACAGATGATGGGGCACTTCCAAGTTTACCTTGTTGTTTTCTGGGCATTGCTTCTCATGACCATTTCTGGAGAGGACGACGCAGGTGCATCAAAAGAGTGTGAAGATGCTCCATTTGTTCCGGGGTACAATCTTGCTGGAGAGGGATTTGATGTTGTGACCATGGAGCGAAAAGGATCTTATGTGATTAACATGGAGAAATGGGATTTAGGAAACAGCACTTGTAAATTGCGCAAAAACAATTACATGAATAGAATAAAACAGAAGCTACCAGCAGCAGTGGTGTTCTGGAGGACTTTGCCAAAGTGTTCAATGAAAGTCTCCAGTCAGATCTTTGAATCAAGTGAAGCACTGGTCAATGATTCATCATCAGCACTCTCAGTCGGCTGGAAAGTTGGTTTAGATGTGAAGGCTGCTGGAGCTGCAGTCGGAAGCACTCATTCCAGGGAAGCAAAATTTGCAATGACAAAATCCAAAGAAGACAAATACAGTTTCACCAAACATGAAGTTGCATGCAGCTTTTACAGGTGAGAGAGCTGGCTTGTTTTTCCTCATAAAATGACTATGAAAAGAAATGAAAACTTTAACTGTAAATTGCTCCCTCTTTGATCTCACTGAATTCAAAGGTATTAACTGTTTCTTTACAGTTATCGTGTAGCTGAAAAGCCTCCCCTTCATGCAGAGTTTCTTGAAGCAATCAAATCACTCCCTGCATCCTACGATCCAGACGCCTACCGCAACCTGATCACCACATATGGCACTCACTATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACTTTTGAAATGTTTTACTTTACATGTAGGGAATCTAGAATATATGAAAGTTTCATTTTTAAAAATAATTTATAATAAAAAAATTAACTTTTTGATGATATTCTAATTATATGACCAGCACCTGTATATGTTACGTAGGCAGCTGAACTAAACTACAAAATCTAACTTTATTTATAATCTTTAATTATTTGCAGAATATTATATTTAAATCAATCAAGGACAGTTATGTGGGCTGGACAGTTATGTGGAAGGGCTTTTTATATATGCCTTACATTCAAGCACATCATCTTCTGGATGCATGTGCTTTATAATCTTCATTTTGGTTAACAATAATCACAGCAATTATGTAATTAATAGAAGTGTAATTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU268622 lncRNA upstream 7409 11639904 ~ 11640550 (+) True G236857
TU268618 lncRNA upstream 18932 11628707 ~ 11629027 (+) True G236853
TU268617 lncRNA upstream 19443 11628286 ~ 11628516 (+) True G236852
TU268616 lncRNA upstream 25106 11622605 ~ 11622853 (+) True G236851
TU268614 lncRNA upstream 30813 11616827 ~ 11617146 (+) True G236849
TU268714 lncRNA downstream 47364 11696859 ~ 11697087 (+) True G236924
TU268732 lncRNA downstream 102019 11751514 ~ 11751727 (+) True G236942
TU268767 lncRNA downstream 205478 11854973 ~ 11855763 (+) True G236972
TU268676 lncRNA downstream 248735 11898230 ~ 11907383 (+) True G236886
TU268685 lncRNA downstream 307577 11957072 ~ 11958097 (+) True G236895
CI01000054_11637464_11637950.mRNA mRNA upstream 9768 11637333 ~ 11638191 (+) True CI01000054_11637464_11637950
CI01000054_11633235_11635069.mRNA mRNA upstream 12856 11632959 ~ 11635103 (+) False CI01000054_11633235_11635069
CI01000054_11600741_11608257.mRNA mRNA upstream 39597 11600506 ~ 11608362 (+) False CI01000054_11600741_11608257
CI01000054_11564820_11568338.mRNA mRNA upstream 79509 11564820 ~ 11568450 (+) False CI01000054_11564820_11568338
CI01000054_11536181_11537063.mRNA mRNA upstream 110795 11534757 ~ 11537164 (+) True CI01000054_11536181_11537063
CI01000054_11659093_11663413.mRNA mRNA downstream 9598 11659093 ~ 11663607 (+) True CI01000054_11659093_11663413
CI01000054_11666236_11693431.mRNA mRNA downstream 16741 11666236 ~ 11693479 (+) True CI01000054_11666236_11693431
CI01000054_11783772_11784302.mRNA mRNA downstream 134277 11783772 ~ 11785006 (+) True CI01000054_11783772_11784302
CI01000054_11785504_11789031.mRNA mRNA downstream 135819 11785314 ~ 11789697 (+) True CI01000054_11785504_11789031
CI01000054_11793688_11807158.mRNA mRNA downstream 144193 11793688 ~ 11807377 (+) True CI01000054_11793688_11807158
TU268596 other upstream 13895 11632976 ~ 11634064 (+) True CI01000054_11633235_11635069
TU267998 other upstream 78960 11564976 ~ 11565121 (+) True G236317
TU267167 other upstream 1255581 10388136 ~ 10392378 (+) True G235560
TU264679 other upstream 3318371 8305937 ~ 8306053 (+) True G233242
TU264744 other upstream 3343010 8304599 ~ 8304949 (+) True G233306
TU268664 other downstream 164193 11813688 ~ 11816475 (+) True G236874
TU269301 other downstream 1235407 12884902 ~ 12886503 (+) False G237398
TU269302 other downstream 1235407 12884902 ~ 12886503 (+) True G237398

Expression Profile