RNA id: CI01000054_11780397_11781842.mRNA


Basic Information

Item Value
RNA id CI01000054_11780397_11781842.mRNA
length 646
RNA type mRNA
GC content 0.45
exon number 4
gene id CI01000054_11780397_11781842
representative False

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 11778890 ~ 11781880 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTGACTGCTGTATCAAATCAAAGCTCAGTAAAGATGGCAGCGTTAGCAGTGGTGGAAACCCCATCTGGGAAAGATGCTCTCGCGGAGGGTTTGCTGGACCTCTTGAGACCCGCGGTACAGCAACTCGACTTACATGTGCACTCAGTCAGAGAAAGCCAGGTGGAACTTAGGGAACACATTGATAATTTGGCATCTGAGTTGTGTAGGATCAACGAACACCAGAAGGTGGCACTAGACTTAGACCCATATGTTAAAAAACTTCTTAATGCCAGGAGAAGAGTGGTGCTTGTCAATAACATACTCCAGAATGCACAGGAACGTTTGCGGAGGTTGAACCATAATGTTGCTAAGGAGACGGCACGCAGGAAGACCATGCTTGAGGCATCTGGAGCATTTACCCCACGCTCTCCTAGCAAACCATGATGTCCTGAATCTCACATTTTGGGAATGCACCATTACACTGTGCTCAATGCCAAGGAGCAACGCTGTAGATTTGCAGAATCTTCCTCACATTGTTAAAGGGCACTGGGCTATGCAAAGCACTGCTACAGCAGAATTAATGTCAGTTCATTTAAGAGTAGTCAGGGAGACAGCAGTGTAAATATGCACTCATTTCTTTGTTGAACATATGACTTTTTGAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268986 lncRNA downstream 165268 11614543 ~ 11614907 (-) True G237125
TU268573 lncRNA downstream 201477 11578372 ~ 11578698 (-) True G236815
TU268568 lncRNA downstream 220538 11559391 ~ 11559637 (-) True G236810
TU268563 lncRNA downstream 234753 11545194 ~ 11545422 (-) True G236808
TU268562 lncRNA downstream 236637 11543254 ~ 11543538 (-) True G236807
TU268893 lncRNA upstream 724 11782600 ~ 11789638 (-) True G237079
TU268984 lncRNA upstream 120174 11902050 ~ 11903026 (-) True G237123
TU268947 lncRNA upstream 127557 11909433 ~ 11911150 (-) True G237087
TU268962 lncRNA upstream 175184 11957060 ~ 11958114 (-) True G237101
TU269044 lncRNA upstream 187033 11968909 ~ 11969500 (-) True G237179
CI01000054_11758803_11774872.mRNA mRNA downstream 5303 11758297 ~ 11774872 (-) True CI01000054_11758803_11774872
CI01000054_11724484_11731711.mRNA mRNA downstream 48464 11723995 ~ 11731711 (-) True CI01000054_11724484_11731711
CI01000054_11705281_11711296.mRNA mRNA downstream 68879 11704581 ~ 11711296 (-) True CI01000054_11705281_11711296
CI01000054_11699420_11703409.mRNA mRNA downstream 76443 11698966 ~ 11703732 (-) True CI01000054_11699420_11703409
CI01000054_11594619_11599264.mRNA mRNA downstream 180878 11594586 ~ 11599297 (-) True CI01000054_11594619_11599264
CI01000054_11815575_11845247.mRNA mRNA upstream 33421 11815297 ~ 11846146 (-) True CI01000054_11815575_11845247
CI01000054_11873443_11903635.mRNA mRNA upstream 91122 11872998 ~ 11904256 (-) False CI01000054_11873443_11903635
CI01000054_11964578_11981248.mRNA mRNA upstream 182501 11964377 ~ 11981319 (-) False CI01000054_11964578_11981248
CI01000054_12078098_12079883.mRNA mRNA upstream 296054 12077930 ~ 12079896 (-) True CI01000054_12078098_12079883
CI01000054_12106998_12109333.mRNA mRNA upstream 324309 12106185 ~ 12109835 (-) True CI01000054_12106998_12109333
TU268495 other downstream 484391 11285194 ~ 11295784 (-) False G236748
TU268494 other downstream 488935 11285194 ~ 11291240 (-) False G236748
TU268162 other downstream 898959 10871104 ~ 10881216 (-) True CI01000054_10872970_10881017
TU268159 other downstream 960830 10803871 ~ 10815565 (-) False G236458

Expression Profile