RNA id: TU268938



Basic Information


Item Value
RNA id TU268938
length 1902
RNA type TUCP
GC content 0.36
exon number 4
gene id CI01000054_11780397_11781842
representative False

Chromosome Information


Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 11778890 ~ 11781880 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TAAAGATGGCAGCGTTAGCAGTGGTGGAAACCCCATCTGGGAAAGATGCTCTCGCGGAGGGTTTGCTGGACCTCTTGAGACCCGCGGTACAGCAACTCGACTTACATGTGCACTCAGTCAGAGAAAGCCAGGTGGAACTTAGGGAACACATTGATAATTTGGCATCTGAGTTGTGTAGGATCAACGAACACCAGAAGGTGGCACTAGACTTAGACCCATATGTTAAAAAACTTCTTAATGCCAGGAGAAGAGTGGTGCTTGTCAATAACATACTCCAGAATGCACAGGAACGTTTGCGGAGGTTGAACCATAATGTTGCTAAGGAGACGGCACGCAGGAAGACCATGCTTGAGGCATCTGGAGCATTTACCCCACGCTCTCCTAGCAAACCATGATGTCCTGAATCTCACATTTTGGGAATGCACCATTACACTGTGCTCAATGCCAAGGAGCAACGCTGTAGATTTGCAGAATCTTCCTCACATTGTTAAAGGGCACTGGGCTATGCAAAGCACTGCTACAGCAGAATTAATGTCAGTTCATTTAAGAGTAGTCAGGGAGACAGCAGTGTAAATATGCACTCATTTCTTTGTTGAACATATGACTTTTTGAATAAAAGTATTTGTCTGTATGAATGTAACTGATGCTGAAAAATGCTCTTATATTGCAGTGCTGCAGATTTGCTAATTATTTGCAAATGTATAAAATTATCTATCAGTACTGTCAGAGATAGTATCCAGTTTAATGTACCAGATAAGGAAATCTCTTGCCAGTCTTGATTTAGTCAGTGAGAGCAGTTTATTGTAATTGTTTTGCTCACATGTGGAAATGATCCACACTTAGCAGTTTAGTGAATTATTTTATTACCATATTTTTTTTCTTGGTTTTATATGCAAGCTTGTTTCTGTCATGTAATAAAAAAATACAAAATGTAATTGTGACTTTTTATCTCAATTCTGACAATTTTTCTCGCAAGCTTATATCTCAATTCTGACTATAACTCGCAATTGCGTGTTTATATCTCGCAATTTTGACTTTATAAGTTGTAATTACAAGTTTATTTCTCGCAATATGGACTTTATAATTAGCAACTGCTAATTTATTTCTCGCGATATGGACTTCTATAACTCGCAATTGCGAGTTTATGTCTCACAATTCTGAGAAAAAAGTTATAATTGAGATGTAAACACGCAATTGCAAGATAAAGTCAGAATATGAGATAAGATGTCGCAATTTGGGTGAACTATCCCTTTAAGAAAACATTGAAAACTTTTTAAACATTTGAAACTTAAAATAGACTTTTTACAAATAAAGTCTTCTGAAGACTGGATACTATTCATTGACATTGATTTTATTGTTCATTTAATTATAAGGTTACACTTTATTTTAAGGTGACGTAGTTACATTGTACTTACTCAAATAAGTACTGAGCAATGTTGGGGTAGCGCATTACAAGTAACTTGTACAAGTAGTCAAGTAACAAGTAATCAGATTACTTTTTCAAGTAGCTAGTAAAGTAACACATTACTTTTTCAATTTACAACAAAATATCTTATCAAGTTACTTTTTCAAATAAGTAACACAAGTTACTTTTTCACATTTATTGACTGACAGCTCTCCTGTCCCCATGTTGAGAGAAATAAAGTGCAGAGGTGTTGTGTGATTTAGAAATAAGAGTGTTGAACTTCCTTCTCTTGTATCCTATTCTTCTTTAATCCAGAATGGCAGCACAGCTGAAAGGTTTGTTTGAGCTCCGCTCTCTACTGTACAGATGTAAATATGCATTTCCTTCAGTCTGAGGCTTATTCACTTCACTTTTGATGTGAAAGGGTCTTAACATTTGCCAAAAATAGAACTTTTTTTGTTGTTATTAAAAAACAAGCAACCAAGCCCAGCCCAGGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU268986 lncRNA downstream 163983 11614543 ~ 11614907 (-) True G237125
TU268573 lncRNA downstream 200192 11578372 ~ 11578698 (-) True G236815
TU268568 lncRNA downstream 219253 11559391 ~ 11559637 (-) True G236810
TU268563 lncRNA downstream 233468 11545194 ~ 11545422 (-) True G236808
TU268562 lncRNA downstream 235352 11543254 ~ 11543538 (-) True G236807
TU268893 lncRNA upstream 753 11782600 ~ 11789638 (-) True G237079
TU268984 lncRNA upstream 120203 11902050 ~ 11903026 (-) True G237123
TU268947 lncRNA upstream 127586 11909433 ~ 11911150 (-) True G237087
TU268962 lncRNA upstream 175213 11957060 ~ 11958114 (-) True G237101
TU269044 lncRNA upstream 187062 11968909 ~ 11969500 (-) True G237179
CI01000054_11758803_11774872.mRNA mRNA downstream 4018 11758297 ~ 11774872 (-) True CI01000054_11758803_11774872
CI01000054_11724484_11731711.mRNA mRNA downstream 47179 11723995 ~ 11731711 (-) True CI01000054_11724484_11731711
CI01000054_11705281_11711296.mRNA mRNA downstream 67594 11704581 ~ 11711296 (-) True CI01000054_11705281_11711296
CI01000054_11699420_11703409.mRNA mRNA downstream 75158 11698966 ~ 11703732 (-) True CI01000054_11699420_11703409
CI01000054_11594619_11599264.mRNA mRNA downstream 179593 11594586 ~ 11599297 (-) True CI01000054_11594619_11599264
CI01000054_11815575_11845247.mRNA mRNA upstream 33450 11815297 ~ 11846146 (-) True CI01000054_11815575_11845247
CI01000054_11873443_11903635.mRNA mRNA upstream 91151 11872998 ~ 11904256 (-) False CI01000054_11873443_11903635
CI01000054_11964578_11981248.mRNA mRNA upstream 182530 11964377 ~ 11981319 (-) False CI01000054_11964578_11981248
CI01000054_12078098_12079883.mRNA mRNA upstream 296083 12077930 ~ 12079896 (-) True CI01000054_12078098_12079883
CI01000054_12106998_12109333.mRNA mRNA upstream 324338 12106185 ~ 12109835 (-) True CI01000054_12106998_12109333
TU268495 other downstream 483106 11285194 ~ 11295784 (-) False G236748
TU268494 other downstream 487650 11285194 ~ 11291240 (-) False G236748
TU268162 other downstream 897674 10871104 ~ 10881216 (-) True CI01000054_10872970_10881017
TU268158 other downstream 959545 10803871 ~ 10816186 (-) True G236458
TU268159 other downstream 959545 10803871 ~ 10815565 (-) False G236458

Expression Profile