RNA id: CI01000054_11783772_11784302.mRNA



Basic Information


Item Value
RNA id CI01000054_11783772_11784302.mRNA
length 1049
RNA type mRNA
GC content 0.42
exon number 2
gene id CI01000054_11783772_11784302
representative True

Chromosome Information


Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 11783772 ~ 11785006 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGGACGCTAGACTGCCCGCATGGTGTGCTCTGCTTACCCAACATGATGGCGGTTACTTGAGTCTATGTAAAAGATCTATTAATGTGCCATGTTTGGCAAGGCGTCTCTTGCGTAAGCAGCACACACCTGGAGTTTCTCTCTGTCTACGGAATAAAGGTGCCCAGTCCATACTTAGACGTGACCTGTCCCCCAACCCCCTTCCCTTCTTCTCAGAAGAAGCGTCCTACAGAACAATGTACCAGGTCACGGTCTTGGTTGTAAGTGGCTGGGTGGCCGGACACCCCTCTAGCCCTGGGCCAACTCACCGTGTGGTGTCTCGGACTGATGACATCACAGTAGGTTGATGGTGGCCTGTAAGTGGCAATCACTCTGAAAGAAATCTGCCTGCCTCTTTTCTGTCTCCGGCTATGTCTACATTAATCCAGATACATTTGAAAATTGTGTTTTTATTTTAAAACGCTCTCCACTCATACTAGTGTTTCCAAAAGTTGCTTGTTCACACTGAACCGTTGGGAAATGCTAAAATCATCTTAATGCATAAGCATAAAATTCAGCAAAAGCTCACTGAGATGGTACCGAGAGAACCTAAAGTTCTGACGCTATTCATCTGGCACAATCACTTTATTAGCACGATATCTCACCACTTATTGGTGTGTTCAGGTCGCACTCAAAATCACTATTCCGTGTATGGTCTAAAATGCAATTGCCCTCATGTTTTGCCACAAAACAGCAATTTTCTTAAATATATATATATATATATATATATATATATATATATTTAAGAAAGCAGAAAAAAACTGCATTTTTCTTGGTCAAAGGAAAGGTACTCCTTCAGAAAACGTACAAATAAAGATACTTTTAGATGTTTATTTGCTGTTTGGGGCATTAGGATCGCTAGACAAGGGCTTAATGAACACATTTTTATGAGAACCTCAATTTCGATCAAAATTTACATTTTTCAATTGTTTTGCCTGTAGCTCGAAATTAGCCTGTGCGCATTCCGACTCATTTTGCCAGCACGGGTCACGCATTTAACAGCACTCTGAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU268732 lncRNA upstream 32045 11751514 ~ 11751727 (+) True G236942
TU268714 lncRNA upstream 86685 11696859 ~ 11697087 (+) True G236924
TU268622 lncRNA upstream 143222 11639904 ~ 11640550 (+) True G236857
TU268618 lncRNA upstream 154745 11628707 ~ 11629027 (+) True G236853
TU268617 lncRNA upstream 155256 11628286 ~ 11628516 (+) True G236852
TU268767 lncRNA downstream 69967 11854973 ~ 11855763 (+) True G236972
TU268676 lncRNA downstream 113224 11898230 ~ 11907383 (+) True G236886
TU268685 lncRNA downstream 172066 11957072 ~ 11958097 (+) True G236895
TU268678 lncRNA downstream 173284 11958290 ~ 11968299 (+) True G236888
TU268677 lncRNA downstream 326623 12111629 ~ 12170392 (+) True G236887
CI01000054_11666236_11693431.mRNA mRNA upstream 90293 11666236 ~ 11693479 (+) True CI01000054_11666236_11693431
CI01000054_11659093_11663413.mRNA mRNA upstream 120165 11659093 ~ 11663607 (+) True CI01000054_11659093_11663413
CI01000054_11648262_11648786.mRNA mRNA upstream 134277 11647959 ~ 11649495 (+) False CI01000054_11648262_11648786
CI01000054_11637464_11637950.mRNA mRNA upstream 145581 11637333 ~ 11638191 (+) True CI01000054_11637464_11637950
CI01000054_11633235_11635069.mRNA mRNA upstream 148669 11632959 ~ 11635103 (+) False CI01000054_11633235_11635069
CI01000054_11785504_11789031.mRNA mRNA downstream 308 11785314 ~ 11789697 (+) True CI01000054_11785504_11789031
CI01000054_11793688_11807158.mRNA mRNA downstream 8682 11793688 ~ 11807377 (+) True CI01000054_11793688_11807158
CI01000054_11911995_11913792.mRNA mRNA downstream 126129 11911135 ~ 11913857 (+) True CI01000054_11911995_11913792
CI01000054_11984922_12021876.mRNA mRNA downstream 199916 11984922 ~ 12021945 (+) True CI01000054_11984922_12021876
CI01000054_12030200_12039539.mRNA mRNA downstream 245194 12030200 ~ 12039539 (+) True CI01000054_12030200_12039539
TU268594 other upstream 134747 11647979 ~ 11649025 (+) False CI01000054_11648262_11648786
TU268595 other upstream 134747 11647979 ~ 11649025 (+) True CI01000054_11648262_11648786
TU268596 other upstream 149708 11632976 ~ 11634064 (+) True CI01000054_11633235_11635069
TU267998 other upstream 214773 11564976 ~ 11565121 (+) True G236317
TU267167 other upstream 1391394 10388136 ~ 10392378 (+) True G235560
TU268664 other downstream 28682 11813688 ~ 11816475 (+) True G236874
TU269301 other downstream 1099896 12884902 ~ 12886503 (+) False G237398
TU269302 other downstream 1099896 12884902 ~ 12886503 (+) True G237398

Expression Profile