RNA id: CI01000054_11873443_11903635.mRNA



Basic Information


Item Value
RNA id CI01000054_11873443_11903635.mRNA
length 1921
RNA type mRNA
GC content 0.41
exon number 8
gene id CI01000054_11873443_11903635
representative False

Chromosome Information


Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 11872998 ~ 11904256 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGTCACTCTCTCTCACTCTCTCTCTTTCATTTTGATCTCTGTAAGGTAATGCTTTTGGTTAGGTGTCATCCAAAAATCCCTTCTAACACTGCAAAAAATTGTTTTTTTAACTTAGATTTTTTGCCTTGTTTCCAGTCCAAATATCTAAAAAAATCTTAAGAAGCATTTTCTAGACTAGTAAAAATTGTCTTGTTTAAAAAATAAGTCAAAATTAAGTGAGTTTTTGCTTAAAACAAGCAAAATAATCTTGTTTTCGGTTTGAAATAAGATTACCCCATTGGCAGATTATTTTGCTTGTTTTAAGGAAAAACTCACTTAATTTTGACTTATTTTTTCTGAAAACAAGACAATAATTTTTACTTGTCAAGAAAATGCTTCTTGATTTAAGAATTTTTAGATGTTTGGACTAGAAACAAGACAAAAAATCTAAGTAAGAAAAGCATTTTTTGCAGTGAAGGGACTGACGACATGACGGCTTTGAATTTGCATCGTAGATGGAGCTCTTGGATTAGTTGGTGAAATTCTCAGTGTTTTCCACTCGTTTTAGACGCGGCGTTAATGTCCAAGCATCTTAACCTGGCACGTCTTGATTAACCGTTTACATTTATTTCCATATGCTGGATGAAGGAATCCATCTGTCCCATAATAACCCACATCAGTGACCCAGAATGTGACCTTGAGCAACAGAAGAACCTTGAGGGGTACGTGGGATTCGCAAATCTCCCCAACCAAGTGTACAGAAAGTCTGTGAAGAGGGGCTTTGAGTTCACTCTCATGGTCGTTGGAGAATCAGGTTTGGGAAAGTCTACACTCATCAACTCCCTGTTCCTGACAGACTTATATTCACCAGAGTATCCCGGACCCTCTCACAGAATCAAGAAAACTGTTCAGAGAATTCTGGGAAGTGAGTCAGACAATCAGTATTTTAGTGATTTGTGTATTAGGAGTAGGAAGAGAAGCTTCATCACTGTTTCACACTGTTGCGTCACTCTTGTCAAACTGAAGAGCTCAAGATCTGTACGGAGGAAGTTAGAGAAGACTTTACGGGTTTGTTACTGGGTCAAGGTGTCTCGTTTGGACCGTTTTTACAGGCAGGTGGTGAACAAGGTGGAGCAGTCCAAGGTGCTGATTAAAGAAGGTGGAGTTCAACTGCTGCTCACCATTGTGGACACGCCAGGCTTTGGAGATGCCGTTGATAACAGTAACTGCTGGCAGCCTGTCACCGACCACATTGACAGCAAATTTGAGGATTACCTCAACGCGGAGTCACGTGTCAATAGACGCCAGATGCCCGATAGTCGAGTGCACTGCTGTCTGTACTTCATCGCTCCCTCTGGTCATGGCACATGTGGTTTTACTACAAGCCGAGCTACAAGTTCAGCCAAGCTGCCAAACAGCAGTGTGAATGTGATACCTCACTACTACTCTACAGAGGAGACTTTTGCTGCTGTTTTTGGACTCATGCTCGGTGTTTAGTTTGAAACATTAAACCCTCGCATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCTGTCTTGTCAGACTGAAACCACTGGATATTGAGTTCATGAAACGGTTACATGAAAAAGTGAACATCATCCCGCTCATCGCAAAAGCAGACACACTGACTCCAGAGGAGTGCCAACAGTTCAAGAAGCAGGTAAGAGTGTGCTAATGTCAAACACTGTACCTGTAGTTTTTATGGTTTTTCTCTCCCCCAAAGTACACTTACAAAAAGGCTTCTTGCCCCAAAAACATCATAATTCATTTTTTTTTTATAATTTTCCACCCACTTTATGACTCTTAGACATAAGCTGGTTGTAAACAGACCGGCCACGTTACTGAATCCTGAATAGGTGCTGGTATCAACGCTGTACAATTATTCTAAATGCATCTATCTAGATTAAACAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU268893 lncRNA downstream 83360 11782600 ~ 11789638 (-) True G237079
TU268986 lncRNA downstream 258091 11614543 ~ 11614907 (-) True G237125
TU268573 lncRNA downstream 294300 11578372 ~ 11578698 (-) True G236815
TU268568 lncRNA downstream 313361 11559391 ~ 11559637 (-) True G236810
TU268563 lncRNA downstream 327576 11545194 ~ 11545422 (-) True G236808
TU268947 lncRNA upstream 5177 11909433 ~ 11911150 (-) True G237087
TU268962 lncRNA upstream 52804 11957060 ~ 11958114 (-) True G237101
TU269044 lncRNA upstream 64653 11968909 ~ 11969500 (-) True G237179
TU269046 lncRNA upstream 67412 11971668 ~ 11971928 (-) True G237181
TU269049 lncRNA upstream 71311 11975567 ~ 11975935 (-) True G237184
CI01000054_11815575_11845247.mRNA mRNA downstream 26852 11815297 ~ 11846146 (-) True CI01000054_11815575_11845247
CI01000054_11780397_11781842.mRNA mRNA downstream 91122 11780175 ~ 11781876 (-) False CI01000054_11780397_11781842
CI01000054_11758803_11774872.mRNA mRNA downstream 98126 11758297 ~ 11774872 (-) True CI01000054_11758803_11774872
CI01000054_11724484_11731711.mRNA mRNA downstream 141287 11723995 ~ 11731711 (-) True CI01000054_11724484_11731711
CI01000054_11705281_11711296.mRNA mRNA downstream 161702 11704581 ~ 11711296 (-) True CI01000054_11705281_11711296
CI01000054_11964578_11981248.mRNA mRNA upstream 60121 11964377 ~ 11981319 (-) False CI01000054_11964578_11981248
CI01000054_12078098_12079883.mRNA mRNA upstream 173674 12077930 ~ 12079896 (-) True CI01000054_12078098_12079883
CI01000054_12106998_12109333.mRNA mRNA upstream 201929 12106185 ~ 12109835 (-) True CI01000054_12106998_12109333
CI01000054_12217279_12251613.mRNA mRNA upstream 312291 12216547 ~ 12251613 (-) True CI01000054_12217279_12251613
CI01000054_12266910_12288366.mRNA mRNA upstream 362560 12266816 ~ 12288366 (-) True CI01000054_12266910_12288366
TU268937 other downstream 90514 11782349 ~ 11782484 (-) True G237082
TU268938 other downstream 91151 11778890 ~ 11781847 (-) False CI01000054_11780397_11781842
TU268495 other downstream 577214 11285194 ~ 11295784 (-) False G236748
TU268494 other downstream 581758 11285194 ~ 11291240 (-) False G236748
TU268162 other downstream 991782 10871104 ~ 10881216 (-) True CI01000054_10872970_10881017

Expression Profile