RNA id: TU268841


Basic Information

Item Value
RNA id TU268841
length 291
lncRNA type sense_over
GC content 0.34
exon number 1
gene id G237041
representative False

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 12320295 ~ 12320760 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTCTCTTATGCACACGTAGACTAAACCAGTATATCAGTACAAGATCACACGTCAACTGATCGTACAGCTTCTCGGATCTCTGTCGGTCTCGACGCTTCTTCTTTTTTCTTTCTTTAAAAACATCAAATTAGTTGTAAAAGATGGTGGCCAAACAGAGGATTCGCATGGCGAATGAGAAACACAGCAAGAACATCACTCTAAGAGGCAATGTGGCCAAATCCACGAGAGGCACTCAAGAAGAGAAGGCAGTGGTGGGACCGTGGCTTCTTGCTTTGTTCGTCTTTGTAGTATGTGGATCAGCAATATTCCAGATCATTCAGAGCATCAGGATGGGAATGTGAAATGAATGGTCATCAGTTTTTTTTTCTCTTCTCCTGGCTTGCCTGAAGATCACTTGATCATTCCCTTTTCTTATTTAATCTTTATATGTCTCAAGTTTTTTTTCATCACAACACCACGGTCTCTTGTGCCTTACTCAAAAGCTGGAGGAACGTTATCTTCTGAAACATTCCAGTGTGGGACTATCAGTATTGCTGCTGAATCCATAACTGAGGCAATAAACCCAAGACTACAAATGACTTTCAACTTTTTCTGTGGAAAAAAACACATGTTTGTTTAAAAGAAATGCTGCAATGTATTTTCTGTGTTCTAGGTTTTTGGACCAGTTCATGTTAATTAACATTATTGGTACTATGCACCTTTATTGGATTTCCCTCTACATTTAGAGCTGAATTTGTGTTCTTTGACTATTCGCTCAAGGAAATGAAGGTCCACATATTCAGTTGTATGTTTAGAGAACATGAAAAATAAAAAAACAATACTTTTAAAATGTCTTTTTTGTCTTTAAAATTTGTAAAAAAAAAAAAAAAAAAAGGGGCCCATAGAATGATATAAAACATATACATACAAGCTCTTATCATTAAACAAATGTAAATATCTGTTGGCTGTTTAGGGGTTTCTGAGTAGACAATCCTATTCTCAGTTTTATAATTCACCAGTAGGGGGCAGTTTGCATATTTATACATTTAAATTACATTATAAGTCAATGTATTTTTCATTTAAAAAAATTGTCACACTTACAGATTATAGAACCACAAATCTAAAAATATTTTTTTGCATGTTTTCTTGACTCTTGAATCAAATAAACAATCTTTAAATCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268669 lncRNA upstream 8557 12309455 ~ 12310013 (+) True G236879
TU268813 lncRNA upstream 92242 12225676 ~ 12226328 (+) True G237016
TU268811 lncRNA upstream 93254 12224596 ~ 12225316 (+) True G237015
TU268677 lncRNA upstream 148178 12111629 ~ 12170392 (+) True G236887
TU268678 lncRNA upstream 350271 11958290 ~ 11968299 (+) True G236888
TU268850 lncRNA downstream 37688 12358290 ~ 12360323 (+) True G237043
TU268854 lncRNA downstream 45199 12365801 ~ 12366046 (+) True G237045
TU268856 lncRNA downstream 47075 12367677 ~ 12367916 (+) True G237047
TU268861 lncRNA downstream 59829 12380431 ~ 12380747 (+) True G237052
TU268873 lncRNA downstream 72977 12393579 ~ 12393793 (+) True G237063
CI01000054_12296634_12299462.mRNA mRNA upstream 19022 12296634 ~ 12299548 (+) True CI01000054_12296634_12299462
CI01000054_12191048_12211237.mRNA mRNA upstream 107333 12189522 ~ 12211237 (+) True CI01000054_12191048_12211237
CI01000054_12142398_12166344.mRNA mRNA upstream 151571 12142398 ~ 12166999 (+) True CI01000054_12142398_12166344
CI01000054_12097635_12100640.mRNA mRNA upstream 217930 12097436 ~ 12100640 (+) True CI01000054_12097635_12100640
CI01000054_12081184_12095030.mRNA mRNA upstream 223070 12080748 ~ 12095500 (+) True CI01000054_12081184_12095030
CI01000054_12321079_12339203.mRNA mRNA downstream 477 12321079 ~ 12339203 (+) True CI01000054_12321079_12339203
CI01000054_12524575_12697096.mRNA mRNA downstream 203973 12524575 ~ 12697096 (+) True CI01000054_12524575_12697096
CI01000054_12811634_12819065.mRNA mRNA downstream 491032 12811634 ~ 12819280 (+) False CI01000054_12811634_12819065
CI01000054_12846104_12850954.mRNA mRNA downstream 524576 12845178 ~ 12851346 (+) True CI01000054_12846104_12850954
CI01000054_12887165_12901376.mRNA mRNA downstream 566471 12887073 ~ 12902006 (+) False CI01000054_12887165_12901376
TU268664 other upstream 502095 11813688 ~ 11816475 (+) True G236874
TU268594 other upstream 669545 11647979 ~ 11649025 (+) False CI01000054_11648262_11648786
TU268595 other upstream 669545 11647979 ~ 11649025 (+) True CI01000054_11648262_11648786
TU268596 other upstream 684506 11632976 ~ 11634064 (+) True CI01000054_11633235_11635069
TU267998 other upstream 749571 11564976 ~ 11565121 (+) True G236317
TU269301 other downstream 564300 12884902 ~ 12886503 (+) False G237398
TU269302 other downstream 564300 12884902 ~ 12886503 (+) True G237398

Expression Profile