RNA id: CI01000054_12846104_12850954.mRNA


Basic Information

Item Value
RNA id CI01000054_12846104_12850954.mRNA
length 2683
RNA type mRNA
GC content 0.41
exon number 10
gene id CI01000054_12846104_12850954
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 12845178 ~ 12851346 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTATATATACACACCTCCCACCACTCCAACCAGAGTAGCAAATGCAATCTGATTAAAGGGAATCCGTCTTCCAAACATGATCTTATGTTATGAAGGAACAGAAGAACCCATAAGAGACACAAAACATCCCACTCCTAAAAAAATAAAATAAAAATAAAAAAGTGTGTTCGCTGCATATTGTATATCAGATCTTCTTCGGCTGTTTGTGGTATTTTGCGTATGCATAAATGATGTATAACTGCATCTGTACAATACAGTACATGAGCATGTATTATAGATGACAATATTCACTTACGCTAAATGTGAAGAAACTTATCGCAGAAACATTATAAGGCTACGACAACATTCAACACATGTATATCTTAATTTTGTAATTAATGTTTTTCTCACTCACCCTGACGTTTTCAATCTTTTCCAGTTATTTTAAAAGAGTTTTTAGAGAAGTCTGCAGTTAAAACACATGTAAGACAAGGACAACCGAGCGACTACGGCAACTCACGCAGGCCAAATGCGACGTATACATTTCCGCATTTCAATTTTTTCAACATAAATTCATAATAAGATGTGTTAGACCCTATTTTTATAAACCACGATTCATATTTCAATAAACATAAAATTATTATAAACATTACATATTAAGCGTTAAAAGACCTGCATTTACGTCTTTATTACATATTCATGAGACGCCATGACCAAAAGACAGAATGCTTCACACTCCAGTCCAGTTGGTGGCAGTAGAACACCATAAGTTGGCTTGTCAACCGCCATTAAATCGTACAAGAAGAAGATGACCCAAACACGGAAATAGATCTTCAAGTGTCTAAATTTAAGGCAGAAAACACTACGTAAATGCGCCAGAAAATGAACATTTACAGCCGGAGTTAAAATGCTGAACATTGAAACTCATTTGAGGTTTATGTGGAGAAATGGAAAAGATTCGAGAGCGCTTCAAATTGAACAAATCCTCATGTGAACCAGTGAGACTGAGAAAGAGGAGCTCCATTCTGTACAGCACAGATGACAAGAGACCTCAAACACTTGAAACATTAACTGTAAATGAGATCCTTAACCTGTTTATCACTTATGGCTACGAGACCTGGGAATGGAAGGAAGGCATCCGAGGATATTCTTATCCTCTCCTGTTCGCTCTGATGTATAAACTCCTGTATCTGATGAATTATGACACAGCGTATCTGTTGGTGTTTTTGCCACGTGTTTTCCAGGCACTGCTGGCTGCATATGCCGACGTGAAGCTGTACCACCTCGTCCAGCAGTGGGAATCTCCAGATGTGGCCAAATGGACATGTTTCTGTCAGCTGTGTTCATGGTTCACCTGGTACTGCTGCAGTCGGACTCTGACCAACACCATGGAAACGGTTCTGACCACCCTGGCGCTTTGCTTTTACCCATTACCTGGCTCTAAAATGCACAACAGGGCTCTTGCACTGGCCGTCTCGACACTGATAGACTCTGTGTTCTATGGAAAGTGGATCCTGGTCCAATGGAACTTCCTGAAGTTTAACGTGCTGCACAATGTGGCGGAGTTTTATGGAGCACATCCGTGGCACTGGTACTTCACTCAGGGTCTGCTGGTCGTGATCGGACCTCACATACCGCTCTTCATGCACGGTTGTTCATTGGCCACCAAAAAGCACAGAATCCTGCTAATAACCATCTTATGGACTACAGCCATTTACAGTTTGCTCGCACACAAGGAGTTCCGGTTTATTTATCCACTGTTGCCATTCTGTATGATATTTTGCGGTATGTCTTTAGCGAAGCTACAAGCATGGAGGAAAACTGCTGCTGGTGCACTGTTGGTGCTCAATCTGTTTCCTGCCTTATATACGGGTTTAATTCACCAGCGTGGATCTCTGGATGTCATGCATGACATACAACGGCTGTGTGACATCAGTGACTCTCAGAACTCACCTGAGCTGCTGTTCCTCATGCCCTGTCACTCCACACCACTGTACAGTCACCTACATTGTCCCCTTAAACTGCGTTTCCTGGAGTGTCCACCTGATCTTACAGGAAATGAGGAGTATGTGGATGAAGCAGCTATGTTCTTCTCCAACCCTCTTCAGTGGCTCAGAAAGTCCTTTCCATCTCAGTCAACGTTACCTTCACATATAGTGCTGTTTGACTCCCTGGAGAAGGAAATTGCAGCATTCCTGGAGGAAAACCGATTTACCAAACAAGCTGAAATTTTCCACACTCACTTTCCTGAAGGTCGACTGGGAAAGAACATATTAATATACACCAGAGGATCTGGACTAAAGATGAATTAATTTTTATTGTTTGAAAATGTACAACCAATTGCAAACTTATATAAAGACTTGCTTTATTTTTGTTACATTGTTTCTTTGATTTCACACCAGACTCGCAAACACTTTTCCAGTGTAAGATCCATTTCTGTTTTAGCTTGATTTGTCAAGGCAGGAGGACAATTATCAATGAAGCATCGAAAGACTTTTATTCTACAGTTTAAGTGCAACATAAGCAGTTAAGTGCATTTGTGTTCAGTTACATTAGAGCAGATGACTAGTGCATCTTACAGCTGTTTCCAAACAAGGAATGTTACTTAGCCCATAACCACTCAAAAAAGAGGGGAAAATAGTGCAGTAACAATTGCAGATTGAAACTATTTCAAATAATATCTTCAACTGATTAGCATGTTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU269298 lncRNA upstream 23265 12730710 ~ 12821913 (+) False G237396
TU269296 lncRNA upstream 23265 12819695 ~ 12821913 (+) True G237396
TU269272 lncRNA upstream 215435 12618522 ~ 12629743 (+) True G237374
TU269274 lncRNA upstream 231650 12612022 ~ 12613528 (+) True G237376
TU269262 lncRNA upstream 405591 12439369 ~ 12439587 (+) True G237369
TU269349 lncRNA downstream 19370 12870716 ~ 12878293 (+) True G237436
TU269552 lncRNA downstream 103186 12954532 ~ 12954797 (+) True G237621
TU269558 lncRNA downstream 115282 12966628 ~ 12966937 (+) True G237627
TU269562 lncRNA downstream 129421 12980767 ~ 12980980 (+) True CI01000054_12982344_12998857
CI01000054_12811634_12819065.mRNA mRNA upstream 25898 12811634 ~ 12819280 (+) False CI01000054_12811634_12819065
CI01000054_12524575_12697096.mRNA mRNA upstream 148082 12524575 ~ 12697096 (+) True CI01000054_12524575_12697096
CI01000054_12321079_12339203.mRNA mRNA upstream 505975 12321079 ~ 12339203 (+) True CI01000054_12321079_12339203
CI01000054_12318711_12319755.mRNA mRNA upstream 525208 12318711 ~ 12319970 (+) False CI01000054_12318711_12319755
CI01000054_12296634_12299462.mRNA mRNA upstream 545630 12296634 ~ 12299548 (+) True CI01000054_12296634_12299462
CI01000054_12887165_12901376.mRNA mRNA downstream 35727 12887073 ~ 12902006 (+) False CI01000054_12887165_12901376
CI01000054_12982344_12998857.mRNA mRNA downstream 129583 12980929 ~ 12999175 (+) False CI01000054_12982344_12998857
TU268664 other upstream 1028703 11813688 ~ 11816475 (+) True G236874
TU268594 other upstream 1196153 11647979 ~ 11649025 (+) False CI01000054_11648262_11648786
TU268595 other upstream 1196153 11647979 ~ 11649025 (+) True CI01000054_11648262_11648786
TU268596 other upstream 1211114 11632976 ~ 11634064 (+) True CI01000054_11633235_11635069
TU267998 other upstream 1276179 11564976 ~ 11565121 (+) True G236317
TU269301 other downstream 33556 12884902 ~ 12886503 (+) False G237398
TU269302 other downstream 33556 12884902 ~ 12886503 (+) True G237398

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00026106 True 1994 mRNA 0.44 12 NC_007129.7 2203945 ~ 2222128 (-)