RNA id: CI01000054_12887165_12901376.mRNA


Basic Information

Item Value
RNA id CI01000054_12887165_12901376.mRNA
length 2225
RNA type mRNA
GC content 0.49
exon number 8
gene id CI01000054_12887165_12901376
representative False

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 12886994 ~ 12902006 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTATAAAGGCCAAACTTGAAGAAGCCTCAGCGAGAGTGAGGAAACTGCAGCGGGAGAAGAGTAATGCCTTGAGGAGAGAAAAGAGGGCCAAGATGAACATGTGGGCTCTTCTGGAGGAACTGAAGGAGAAAAATCTCATCAACGAAGAGCTGAAAGACAACCTTGAATGCTACTCAGATCTTCCGGTTCATCTCCTGTCGAGGCAGGGCGTAGAGTACACCAAGGCCCAGAGAGATTTTGCCCTTATGCTCCATCTGCATGGTCCAAAGGCATATCACTACCTGAGAGATACCCTGCATATTCACCTGCCACATCCCAGTTCATTGCAAAGACCTGGTCTCAATAAAATTATGTTGGACATGCTGGAAAGACGGCGTCAGGAAGATGAGGTCAAGTACGGATGTGTCACTCTGATGCTGGATGCCATGTCCATCAAAAATAACGTCCAGTATGATCCTCAGACACAAACAATGTTTGGATATGTGGACATGGGGGATCGATTGAATGAGACTGACATGGCTTCTGATGTTCTTGTGTTTATGGTGGTTGGGCTTCAAGGTTATTGGAAAGCTCCAATTGCATATTATTTGACCAAGTCCCTCACCCCACAATCACAGACAGTCTTAGTAGAGCATGCATTAGAAGAGCTGCATCGTCGTCAGATAAGAGTGGTGTGCATGACAATGGATGGTCATGCATCCAATGTCAATATGTGCACTCAACTTGGGTGTGATCTAAAAGCAGACCCCTGTGGCTGGAATAACAACCCTAATGCCAGCCAGTTCAAGTACATCTTTAGGAAGCTGATGGCCCGGTGTGGGGTTGTTAAACCATGCAGAGGCAATGTGACAGCACAGGATGACACACCAGCTGTCATCGACACCTCTACAAGCCTGTCAGCTGTAGATATGTCCTCTGCAGCAGGAGGAGAAGATCTTCCATACCCGTTTGCTGACATTCCTGCCCTAGTACATGACCACAGCTACCTTCCCGTCCGCTTCGATGGTCTTGTGGACAACGCTTTCGTGTACATTTCAGGATTTGTTGTGCGACGGGCTCTGAAGAAGCTGTCCTGTGATGTCTGCCATGCCAGCCTGGTGACAGACGCTGCATCTGCCATCAAGGACCACAGCTACCACCTGCTGACTTTAAAAAAACAATGGAGGTCTGGTGATTCCATCAGAAGGCACAGTGAGGGTCGTCAGGGCAACAGAGTGGGTCATTCGTCAAGCATCAGCAAGTACCAGACGATCACAGCCCATCAAACTGCTAGAGGTCGTGTACATTGTACGGAAGAGGATAGGCTCTGGCTGAAACCACGGGTCCCGCCCCAAGCCTGGCAACATGGTCGTTGCTCGCTCAAGGGGCTGGCAATCGGGGCGATAGACAAGAAGAAGGTCGTCTTCACAGATGCCTCCAAGATGGGTTGGGGAGCTCTGTGCGACAACCGTCCGGCCTTTGGCGCTTGGAACGGCCCGGAAACTTATGGTTCTCCATTACGACCCCGACCACGTCTGGGCATAACCATGTTCTGTGCCCTCTATATATGTACCCTAGGCCCCTCCAGTGCCCTAGTTATGGGCTTGGGTGGATGACTACTGTGTTTCAGTACCCCATTGTCTGGGCTACCCTGTCTTGAGTGTCTGTCGCGAGTCCTTTTTCAAGTGCTCTGCACTGATGCTCGGTCGTCCCCCTGCATAGCACGGCGTGATTGTACTGTCCCCATAGCGTCTTGTAATCAGTATTAATAAGACGAACGACGCAGTACTCGTGTAGTATCGCAAGGGAATGCACTCGGTTACTAGCATAACCCCGGTTCCCTTAGATACGGAATGAGTACTGCGTTCTTTGCCACGCTATGCGCGAGACGCCTCATGCCGTCGCTTCAGTTGAATTTAATCGATTTGCCATGGTGAGACGGCTGCTTATATAGCCCAAGACCCCGCCCCCTTTGGCGGGCTCGAGCAAGCTCGCTCCCCATTGGCTTGCACATTCTGCGCCGTCATTGGTTCGTTTTCTTTAACTTCACGAACCAATGGCCGTGCAGTTCAAACTGCGTGATTGTATAAAGGCTTCAGAATCGGAGAAAAAGGAGTTTTCCCCATAGCGTCTTGTTTTATTAATTAATATTTATTATTAATAAGACGAACGATGCAGTACTCGTTCCGTATCTTGTTCCGTTTTCTTGTTTGTTTTTTTCTTTTAAAGTTTCAAATATGTTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU269349 lncRNA upstream 8780 12870716 ~ 12878293 (+) True G237436
TU269298 lncRNA upstream 65160 12730710 ~ 12821913 (+) False G237396
TU269296 lncRNA upstream 65160 12819695 ~ 12821913 (+) True G237396
TU269272 lncRNA upstream 257330 12618522 ~ 12629743 (+) True G237374
TU269274 lncRNA upstream 273545 12612022 ~ 12613528 (+) True G237376
TU269552 lncRNA downstream 52526 12954532 ~ 12954797 (+) True G237621
TU269558 lncRNA downstream 64622 12966628 ~ 12966937 (+) True G237627
TU269562 lncRNA downstream 78761 12980767 ~ 12980980 (+) True CI01000054_12982344_12998857
CI01000054_12846104_12850954.mRNA mRNA upstream 35727 12845178 ~ 12851346 (+) True CI01000054_12846104_12850954
CI01000054_12811634_12819065.mRNA mRNA upstream 67793 12811634 ~ 12819280 (+) False CI01000054_12811634_12819065
CI01000054_12524575_12697096.mRNA mRNA upstream 189977 12524575 ~ 12697096 (+) True CI01000054_12524575_12697096
CI01000054_12321079_12339203.mRNA mRNA upstream 547870 12321079 ~ 12339203 (+) True CI01000054_12321079_12339203
CI01000054_12318711_12319755.mRNA mRNA upstream 567103 12318711 ~ 12319970 (+) False CI01000054_12318711_12319755
CI01000054_12982344_12998857.mRNA mRNA downstream 78923 12980929 ~ 12999175 (+) False CI01000054_12982344_12998857
TU268664 other upstream 1070598 11813688 ~ 11816475 (+) True G236874
TU268594 other upstream 1238048 11647979 ~ 11649025 (+) False CI01000054_11648262_11648786
TU268595 other upstream 1238048 11647979 ~ 11649025 (+) True CI01000054_11648262_11648786
TU268596 other upstream 1253009 11632976 ~ 11634064 (+) True CI01000054_11633235_11635069
TU267998 other upstream 1318074 11564976 ~ 11565121 (+) True G236317

Expression Profile