RNA id: CI01000054_12982344_12998857.mRNA


Basic Information

Item Value
RNA id CI01000054_12982344_12998857.mRNA
length 2501
RNA type mRNA
GC content 0.39
exon number 4
gene id CI01000054_12982344_12998857
representative False

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 12980767 ~ 12999175 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATATAAATTTGTCCATGTCTTCTACTTGACAGTGATTTTTCTCAGAATGTCCTCTAGATGTCAGGCATGCATTTATCTTTTGCTAAAAAAGCACAGGTAATTGGTCCATTCAGTTCATACAGCTTATAAAAGCTCTGAACGCAATGTATACAATTAATTACTAGCCTAATTTATGTTTTGGTGTGGGCAGTCAGAGTACTGGCAACATGTGAGAAGTGAAAGTACGCAATAACAAGTGAGGGTAAGCTACAGATTAAAATATAGAAGTCCCAGTTATGCAAACCGGCCCACTTCAAGCACTGCTTAGTTGTGATTACAATCCTTTTTTATGCAATTGCAAAATATTTACTGTATACAACTTACCTTTTTTTCTGTGACTGCATGCTCTCGTCACAGTTCTGTTTAGTGTCATTTTTAGTGACTTTTAGTTTATTTTCAGTGTTTTGTTTGTCTAGTTTCCTGCCACTTATGAGTTGTCATGGTTACTGATATGATTAGTTCTATTAGTTCAGCTGTGTCTCCTTATTAACCTTGTTTGTACCACTACTTAAGTTCCTTTGGTTCCTCTGTTCATGGTCAGTTGTTGTTTGTGTTTTATACCCTCAGTTAGTCTGTGTGGATTGTCTGTGTTTGTTTTATTATTAAATGTACTAGAACCTTTCTACTCTTCTTCATCTTTGGATTTTTAAAGTTGTGACAGCTCTGGGTACTGTGTTATTTTTTTCTTCTTTTGATGATTCTTTTTTTGATGTAGTGTCTAATGAATGCTCTGTAGTGTTTAAATATTTACTAAGGCTGTCAAAATTAATGCGTTAACACAAATTCATTTTAACAGCACTAATTTTATTAACGTGCATTTTCTGTTTGACCCGTGGCCTAGACCATAGTTGATGGATGTGCAGAGCAGTGTAGAGGCTTTATTCATCAAGTAAGAATTTACTTTGATAACCAGGAAGACAAGTTTGTGTCAGAAGAAAAGAAATGCGCTTTCATGATGACGTTATTGTCTGGCAAAGCTCTAGACTGGGCTGTGGCAGTTTGGGAAATGGATGTACGATTTAGAACATCTTTTGATTATTACATCCAACAACTGCAAAAAAGTGTTTGAATATCCCCCTGGGGGCAAGGATATATCAACAAATTCTACAAATGTCACAGGGTAACTGTACTGCTGCTGATTATGCCATCATGTTCAGAACGCTCGCTGCTCAAAGTGGATGGAATGATATTTCACTGAAAAGCGTTTTTCAACGGAGCCTCAACCCTGATCTGCAAACAGAGCTGGCTTGTAAAGGAGAAAATGTATAATTTTCTGACTTTGTGACTCTCACTATAAGAATTGATAATCTGATGAGACAAGACGTAGAAGCGTGAGGGAATCTCAACACTTTCCGCCTGCCATCTCGCAACCCATGATGTCATCAACCACCAAGCCAAGTGACGAACCCATGCAACTAGGTCTATCTAGACTATCTGAGGAAGAAAGAATGAGAAGACAACAACTCCGTCTGTGCTTTTATTGCGGTGAAGCTGGCCATCACAGTCCAGGGTGTCCACATAAAGCCCAGACAACTTCTCAGGTAAATATTGAACATTTCTCACTACTAAGTAACAAATCATTAAAGCTCCCCATTAATCTAAAGACTGAAGATGCATCTATTTCATTAATGATCGATTCCGGGGCAGCTTTGAATCTGATACATAAGGATCTTATCAAGAAGTATGACATTCCCACTCAACCATGCAAGCCACCTATCAAGATCAAAGCCGTTGATGATAACACAATTGGAGAGGGGATTATCAATCAGACCAAGCCATTAACACTCCAAGTCAGTTTGTTACATCAAGAATTGATCTCCCTGTATGTCACTGACTGCCCTAAGCATGAAATGATCCTCGGATTTCCATGGCTATCCATTCATGACCCCATTATTTCCTGGCATCATGCCTCACTCACTGCACGTTTGCCCGTTGCGCGCGCTGCAGAGAGCGTCCGGCATTTTCTGAAGCTGAGAAACCCGCTGGCCTCAGTTATTGCGTGCTGCAGAGTCCTGCATTTTCAGACGTTTTTATATCAGATGAAAGTCAAAGGACCCTTTCATCTGAAGGACTGCGGCAATGGGGACCCTTTGAACCACCGGTGGCAGTTTCTACAGGATGAGAAAGGACATGATAGAGGATGACAGGGGTCTTGATATCTCACTGACATTATCCTGCTGTACTGACTGTATCACACACACATACAGTGGTCAAAAGTTTACATCACATTGCAGAATCTGAAAAATCTTAAAATAAGAGCGAGTTGTTTTTTCATTCTTAATACTGTTGTTACCTAGATGATCAACAATTGTTTTTTGTTTGTTTTGTGATAATTGTTCATGAGTCACTTGTATGTCCTGAGCAGTTAAACTGCACACTGTTCTTCACACTGAGGACAACTGAGGGGCTGTTGTTGCTCATTACACTATGCTTTTAATTATTCTGATATGGTCAATTTCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU269558 lncRNA upstream 13992 12966628 ~ 12966937 (+) True G237627
TU269552 lncRNA upstream 26132 12954532 ~ 12954797 (+) True G237621
TU269349 lncRNA upstream 102636 12870716 ~ 12878293 (+) True G237436
TU269298 lncRNA upstream 159016 12730710 ~ 12821913 (+) False G237396
TU269296 lncRNA upstream 159016 12819695 ~ 12821913 (+) True G237396
CI01000054_12887165_12901376.mRNA mRNA upstream 78923 12887073 ~ 12902006 (+) False CI01000054_12887165_12901376
CI01000054_12846104_12850954.mRNA mRNA upstream 129583 12845178 ~ 12851346 (+) True CI01000054_12846104_12850954
CI01000054_12811634_12819065.mRNA mRNA upstream 161649 12811634 ~ 12819280 (+) False CI01000054_12811634_12819065
CI01000054_12524575_12697096.mRNA mRNA upstream 283833 12524575 ~ 12697096 (+) True CI01000054_12524575_12697096
CI01000054_12321079_12339203.mRNA mRNA upstream 641726 12321079 ~ 12339203 (+) True CI01000054_12321079_12339203
TU269301 other upstream 92711 12884902 ~ 12886503 (+) False G237398
TU269302 other upstream 92711 12884902 ~ 12886503 (+) True G237398
TU268664 other upstream 1164454 11813688 ~ 11816475 (+) True G236874
TU268594 other upstream 1331904 11647979 ~ 11649025 (+) False CI01000054_11648262_11648786
TU268595 other upstream 1331904 11647979 ~ 11649025 (+) True CI01000054_11648262_11648786

Expression Profile