RNA id: TCONS_00016696


Basic Information

Item Value
RNA id TCONS_00016696
length 1971
RNA type mRNA
GC content 0.50
exon number 6
gene id XLOC_008315
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 8335600 ~ 8382997 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCATCGCACACGGAAGCGGCTTTACCGAACCTACTATGGGGACGAATGGGCTCTTAAATATTACTCAGGCTACTTGATTGGACGCTTTAGGAGCCTCGTAATTCAATATTAATGAGCTCAGCCTCGGCCATAGTAGGATGAGTAGTTCTGCCACCCGCACGCTGTTTTATCAGATCCGAAGCATACTTACTCTTTGTTCACCAAGGGATGTAAGCACGCAAATTACAGTGTTGTCTGTCTCTGGAAACGTAgttttatatcattttttatatGTGACGTGTTAGATGTGGAACACAGGAATATAGGATAATCGCGGCTGATCCTTTAAACATATTGTGTTCCTCTCTGCCTTTAGACGCTCATAAACCCGTGTCCTGGAAATAAACAGCCACGTATAATAGTTATTAGTTAATTGAGTATTAACCGACTAATAAGCTGAGGAGAAGGGCCGCATATGCTGTGAAAGTTTACCGTGGTGATAACAGCGCCGCCAGGCAGGCATGAGCAGAGCCGAATCTGCAGAAAATGAGGATCGGACGTGAGCTACGTGCGCATCCAGGGGTAGACGACATGACATGGAGAGACTGGGAAATACGGACCTTATAAATGCACACGGACGCGAGAGTATCAGTTCAACGCCAGACAGAGTCCCAAATATAATGGGTCTGAACGCGACCACTGCGGGGGAGCTGCTGGCAGGACACACGTCCAGATCTGGATCTGGAATCACGCTCCTGAAGGACTCAAAAAGCGGCTTGTCTTTGTGTAATGGTGGAGGAGTGCTGTCGCCTTCACCTAAAGCCGACAGAAGTTACGATGAAGCACAGAGCAAGCGTTTACATCTAAATGGACTGGTAGAGACTCCCAATGGGGCCCTTACCAGTCATGGGGACAACAGGCCTATGAAGAGACCGATCGGAGAGCTGCGATTTAGACAAATCCAACACCAGAGGAGAAAAGACGAGGAAAACAGAGACTTCGGGACAAATGGTTGTTCTGCCAACGGGTCTGGATCTGGATGCTCCTCTGAAACGGACCCCATACATGAATGCAAAAGGAGAAAGGTTGAAATAGACTCCAAAACAGACTCTAGTAAAAGCATGCGGACTGTTCCGCCTCTTGCAGCCAATCACCAACACAAAAACTGCTCAGCGTCACACCCTAACGGGGTTTATCACAATGGCCACAAAGTTGCATTGAACCATGTGGCCCCTGGACAGGCCGAAGTGCGAACCGCACCACCTCTGGTGGCAACCTGCTCTCCAGAACACATGGCCCAGCAATACATAGTTCCCTGTATGAAGTTTTACGGCATTTGCGTCAAAGATACTTTCCTGGGGGAACGCCTGGGCAGTAGAGTTGTAGAGGAAGTGCAGACTCTCAATCGCAGTGGGAAGTTCAGAGGAGGCCAGTTGGTCATCCAGAAGAACATCCCATCTAAGAACATTCGCGGGGACCAGATAGCCTGGGTCGAAGGCAATGAGCCGGGCTGCGAGAACATTGGGACCCTCATGGCTCACATTGATGAGGCCATCATGCGCAGTGCTGCCAACGGACAGCTGGGGGATTGTGTCATCAATGGGCGCACACAGGCCATGGTGGCGTGTTACCCAGGCAGTGGCACAGGATACGTGCGACATGTGGACAATCCTAATGGTGACGGGCGCTGCATAACCTGCATCTACTATCTGAACAAGAACTGGGATGTGAAGGTTCATGGAGGTTTATTGCAGATCTACCCTGAGGGTCGTAATGTTGTCGCCAACATCGAGCCTGTTTTTGACCGTCTGCTCATTTTCTGGTCTGATCGGCGAAACCCACATGAAGTGATGCCAGCTTTTGCCACCCGTTATGCCATCACTGTTTGGTACTTTGATGCAAAAGAGCGAGCTGAAGCGAAGGAGAAGTACAGACTGGCTTCAGGACAGAAAGGAGTTCAAGTGCCCGTCACGCAGAGCAGCAAGACCTGA

Function

GO:

id name namespace
GO:0018401 peptidyl-proline hydroxylation to 4-hydroxy-L-proline biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0071456 cellular response to hypoxia biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0005506 iron ion binding molecular_function
GO:0031543 peptidyl-proline dioxygenase activity molecular_function
GO:0031545 peptidyl-proline 4-dioxygenase activity molecular_function
GO:0008198 ferrous iron binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0031418 L-ascorbic acid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-757 Predicted to enable ferrous iron binding activity and peptidyl-proline 4-dioxygenase activity. Predicted to be involved in cellular response to hypoxia and peptidyl-proline hydroxylation to 4-hydroxy-L-proline. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in renal cell carcinoma. Orthologous to human EGLN2 (egl-9 family hypoxia inducible factor 2).

Ensembl:

ensembl_id ENSDART00000190066

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016691 lncRNA upstream 529680 7805779 ~ 7805920 (+) True XLOC_008312
TCONS_00018758 lncRNA upstream 598069 7734489 ~ 7737531 (+) True XLOC_008311
TCONS_00018757 lncRNA upstream 1194718 7140410 ~ 7140882 (+) True XLOC_008308
TCONS_00018888 lncRNA upstream 1460052 6867276 ~ 6875548 (+) True XLOC_008306
TCONS_00018756 lncRNA upstream 1549545 6785649 ~ 6786055 (+) True XLOC_008304
TCONS_00018889 lncRNA downstream 380963 8762474 ~ 8764113 (+) False XLOC_008319
TCONS_00016701 lncRNA downstream 381069 8762580 ~ 8765029 (+) True XLOC_008319
TCONS_00016708 lncRNA downstream 823753 9205264 ~ 9211131 (+) True XLOC_008325
TCONS_00016715 lncRNA downstream 1032642 9414153 ~ 9418151 (+) True XLOC_008329
TCONS_00016716 lncRNA downstream 1070467 9451978 ~ 9457382 (+) True XLOC_008330
TCONS_00016695 mRNA upstream 100071 8192720 ~ 8235529 (+) True XLOC_008314
TCONS_00016694 mRNA upstream 100654 8192715 ~ 8234946 (+) False XLOC_008314
TCONS_00016692 mRNA upstream 184115 7992906 ~ 8151485 (+) False XLOC_008313
TCONS_00016693 mRNA upstream 184229 8043751 ~ 8151371 (+) True XLOC_008313
TCONS_00016690 mRNA upstream 1145417 7187228 ~ 7190183 (+) True XLOC_008310
TCONS_00016698 mRNA downstream 13308 8394819 ~ 8400091 (+) True XLOC_008316
TCONS_00016702 mRNA downstream 386139 8767650 ~ 8799977 (+) True XLOC_008320
TCONS_00016704 mRNA downstream 671548 9053059 ~ 9069172 (+) True XLOC_008322
TCONS_00016705 mRNA downstream 691310 9072821 ~ 9089507 (+) True XLOC_008323
TCONS_00016706 mRNA downstream 735819 9117330 ~ 9184449 (+) False XLOC_008324
TCONS_00016681 other upstream 1563480 6770586 ~ 6772120 (+) True XLOC_008302
TCONS_00016680 other upstream 1608518 6678521 ~ 6727082 (+) True XLOC_008301
TCONS_00016677 other upstream 1776415 6559050 ~ 6559185 (+) True XLOC_008299
TCONS_00016665 other upstream 2480375 5855111 ~ 5855225 (+) True XLOC_008292
TCONS_00016634 other upstream 4829177 3506309 ~ 3506423 (+) True XLOC_008259
TCONS_00016699 other downstream 301311 8682822 ~ 8682937 (+) True XLOC_008317
TCONS_00016700 other downstream 350241 8731752 ~ 8731866 (+) True XLOC_008318
TCONS_00016703 other downstream 657539 9039050 ~ 9039164 (+) True XLOC_008321
TCONS_00016712 other downstream 922298 9303809 ~ 9311478 (+) True XLOC_008326
TCONS_00016719 other downstream 1514347 9895858 ~ 9895986 (+) True XLOC_008335

Expression Profile

//