RNA id: TU260828



Basic Information


Item Value
RNA id TU260828
length 1056
lncRNA type read_through
GC content 0.43
exon number 4
gene id G229848
representative False

Chromosome Information


Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 978703 ~ 981912 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TGAGAGCAACATGTGGATTTTATTAAAAATGTCCATAGAACACTTCATAAAATCTATTAAAATGACTTGATCTTTCATTCAAGGCAAGGTCCAGGGCTGCCAGGTCCAAGATTTAAAATAAATATGATAGTGAGGAAGTGTACAGTCCTTGAACTTTTTACATCTTATCTCATTCTCACTCTACCATAAAATCATATACTTAGTTCCCATGACAATGCCATGATTATAGTAAGTAATGAAATAAACATGTAACAGTGAATGTGGGTTGTGGTGTCTCATGGTAATCTGTAGTGTACCACTTGTTTTCGGTGTTTTTAAAAAGCGTACGACATGCTATGACAATTGAGTGTGGATGGTTGCTGATGCACATATTTTTTTGTGATTGCGTCCATTGAGCTGTACTGGTAATATTAAAAAGCATTAAAACATAAGAAGTGAGAGGGCATTGCACATTTCCTATGAAGCATTACAGAATAAAAGGTTTCTTCCTCCAGTTGTTCTCTCTTCTATCACACACACACACACACAAAAACATTTTCCCTTTACCGCCGAGAAAATCTGTTCTTGAATGCTTTGATAGTCTTAGCCATCATTGGGGCAATTTTTTTGACTTGTGGTTTTTCTCTGGCACTGTGTCCACCAGCTGTGCTGGGAGCAGAGGAGCGTGAGGAGGACTCAGGGGGGCTGCTGAAAGAAGACTGACCAACCTCAGTGGATCTGCTGTGGGCGCTGTAGTTTGTTGCTGGTCTGATCCTGGCAGATGGAGGAGCAGCGCTTGTGCTGGTAGAACCATTTTTAGTGCCAAACTTCTCTTGTAGACGGAGGATATTTCGTGGCGGCTTAGCGGCAGAGTTGACATATGCCATTTTAACCTGCCGCCCTTTAGGTTTGTTTGCATGGGCAGAACTGATGTTCATCGTGAGCTTGCGCAGACGTTCTTCCCGTTCTTCATGGAGCCGGAGATACATCTCCCTCCAGGATTCATATTCTTGAGGGGTATCACGTTTAAAATCCCGCCGGCAGTGTCTCATCCACAGATCATCTGACTCCTCTGTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU260825 lncRNA upstream 1743 970579 ~ 976960 (+) True G229847
TU260698 lncRNA upstream 60429 917989 ~ 918274 (+) True G229736
TU260696 lncRNA upstream 62374 916116 ~ 916329 (+) True CI01000054_00916253_00919736
TU260679 lncRNA upstream 117483 860600 ~ 861220 (+) True G229717
TU260635 lncRNA upstream 606771 371630 ~ 371932 (+) True G229682
TU260835 lncRNA downstream 1688 983600 ~ 985153 (+) True G229849
TU260853 lncRNA downstream 28809 1010721 ~ 1011128 (+) True G229864
TU260854 lncRNA downstream 31263 1013175 ~ 1013401 (+) True G229865
TU260862 lncRNA downstream 76096 1058008 ~ 1059151 (+) True G229872
TU260874 lncRNA downstream 140180 1122092 ~ 1122351 (+) True G229883
CI01000054_00916253_00919736.mRNA mRNA upstream 58717 916253 ~ 919986 (+) False CI01000054_00916253_00919736
CI01000054_00885259_00886020.mRNA mRNA upstream 92683 885259 ~ 886020 (+) True CI01000054_00885259_00886020
CI01000054_00879731_00882536.mRNA mRNA upstream 96106 879731 ~ 882597 (+) True CI01000054_00879731_00882536
CI01000054_00869317_00877277.mRNA mRNA upstream 100574 867126 ~ 878129 (+) True CI01000054_00869317_00877277
CI01000054_00666830_00754317.mRNA mRNA upstream 224386 666392 ~ 754317 (+) True CI01000054_00666830_00754317
CI01000054_00992036_01004247.mRNA mRNA downstream 10124 992036 ~ 1004392 (+) True CI01000054_00992036_01004247
CI01000054_01007770_01028369.mRNA mRNA downstream 25740 1007652 ~ 1028832 (+) True CI01000054_01007770_01028369
CI01000054_01042925_01056338.mRNA mRNA downstream 60979 1042891 ~ 1056561 (+) True CI01000054_01042925_01056338
CI01000054_01087465_01101501.mRNA mRNA downstream 105020 1086932 ~ 1101774 (+) True CI01000054_01087465_01101501
CI01000054_01103702_01106852.mRNA mRNA downstream 121529 1103441 ~ 1106852 (+) True CI01000054_01103702_01106852
TU260714 other downstream 244423 1227807 ~ 1227900 (+) True G229740
TU260738 other downstream 284438 1266350 ~ 1273750 (+) True G229760
TU260932 other downstream 415168 1397080 ~ 1407130 (+) False G229936
TU260728 other downstream 596523 1578435 ~ 1582069 (+) True G229750
TU260765 other downstream 669048 1650960 ~ 1661565 (+) True CI01000054_01650242_01665628

Expression Profile