Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU260830 |
| length | 857 |
| lncRNA type | read_through |
| GC content | 0.40 |
| exon number | 2 |
| gene id | G229848 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000054 |
| NCBI id | null |
| chromosome length | 13006764 |
| location | 978703 ~ 981912 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU260825 | lncRNA | upstream | 1743 | 970579 ~ 976960 (+) | True | G229847 |
| TU260698 | lncRNA | upstream | 60429 | 917989 ~ 918274 (+) | True | G229736 |
| TU260696 | lncRNA | upstream | 62374 | 916116 ~ 916329 (+) | True | CI01000054_00916253_00919736 |
| TU260679 | lncRNA | upstream | 117483 | 860600 ~ 861220 (+) | True | G229717 |
| TU260635 | lncRNA | upstream | 606771 | 371630 ~ 371932 (+) | True | G229682 |
| TU260835 | lncRNA | downstream | 3351 | 983600 ~ 985153 (+) | True | G229849 |
| TU260853 | lncRNA | downstream | 30472 | 1010721 ~ 1011128 (+) | True | G229864 |
| TU260854 | lncRNA | downstream | 32926 | 1013175 ~ 1013401 (+) | True | G229865 |
| TU260862 | lncRNA | downstream | 77759 | 1058008 ~ 1059151 (+) | True | G229872 |
| TU260874 | lncRNA | downstream | 141843 | 1122092 ~ 1122351 (+) | True | G229883 |
| CI01000054_00916253_00919736.mRNA | mRNA | upstream | 58717 | 916253 ~ 919986 (+) | False | CI01000054_00916253_00919736 |
| CI01000054_00885259_00886020.mRNA | mRNA | upstream | 92683 | 885259 ~ 886020 (+) | True | CI01000054_00885259_00886020 |
| CI01000054_00879731_00882536.mRNA | mRNA | upstream | 96106 | 879731 ~ 882597 (+) | True | CI01000054_00879731_00882536 |
| CI01000054_00869317_00877277.mRNA | mRNA | upstream | 100574 | 867126 ~ 878129 (+) | True | CI01000054_00869317_00877277 |
| CI01000054_00666830_00754317.mRNA | mRNA | upstream | 224386 | 666392 ~ 754317 (+) | True | CI01000054_00666830_00754317 |
| CI01000054_00992036_01004247.mRNA | mRNA | downstream | 11787 | 992036 ~ 1004392 (+) | True | CI01000054_00992036_01004247 |
| CI01000054_01007770_01028369.mRNA | mRNA | downstream | 27403 | 1007652 ~ 1028832 (+) | True | CI01000054_01007770_01028369 |
| CI01000054_01042925_01056338.mRNA | mRNA | downstream | 62642 | 1042891 ~ 1056561 (+) | True | CI01000054_01042925_01056338 |
| CI01000054_01087465_01101501.mRNA | mRNA | downstream | 106683 | 1086932 ~ 1101774 (+) | True | CI01000054_01087465_01101501 |
| CI01000054_01103702_01106852.mRNA | mRNA | downstream | 123192 | 1103441 ~ 1106852 (+) | True | CI01000054_01103702_01106852 |
| TU260714 | other | downstream | 246086 | 1227807 ~ 1227900 (+) | True | G229740 |
| TU260738 | other | downstream | 286101 | 1266350 ~ 1273750 (+) | True | G229760 |
| TU260932 | other | downstream | 416831 | 1397080 ~ 1407130 (+) | False | G229936 |
| TU260728 | other | downstream | 598186 | 1578435 ~ 1582069 (+) | True | G229750 |
| TU260765 | other | downstream | 670711 | 1650960 ~ 1661565 (+) | True | CI01000054_01650242_01665628 |
