RNA id: TU261278



Basic Information


Item Value
RNA id TU261278
length 2857
lncRNA type antisense_over
GC content 0.34
exon number 2
gene id G230238
representative True

Chromosome Information


Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 993392 ~ 996451 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AAAAATTACTGTATTGTTTGCTTATAATGAACCCAAAATATGTTGGAAATGAACATTTATTAATAAGTTTAATGAATAACAATTAAACAATAAACATTTATTAAATTGCTTATTAATAAATGTTCACCTTTTGATTATTATTGTTGCCTCTAGTAATTATGTCTGATTTTTAATTTCCAACCTATTTTAACATGCTTTTAACCCAACTATTGTTTAAAAATGACTGTATTACTTGCTTAAAATGAACCCAAAGTAAAATGAACCTAAAATTTTAAACAATAGTTGGGTTAAATAAAACTACCTAACAGGTTGGGCAAACATTTAATCCAACCACTGGGTTAAAACAACCCAACCACTGGGTTTTTCTCCATTTTAAACCCAACTTGGTTTGTTTTTAACCCAGCATTTTGTGTATTTACTACTCATTTATGCTTATTTTTCATTATATTTTCACCTTCTCAAGGTATTATTTGATGTTTGTTGTCTTCAGTTGTTCTTCAAATGGTCCTATAAATGTGACAAGATATTTTGTACTCGTTTGTGGTTAGATATTGGACACCTGCCATGTACTGCAGGAGTGACGATGTTCTCAGAATTTGTTGCTCATTTGAACAAGATGTATCTTTCCTGCAATAATATTTTGTACAACGTAAGACTTTTGATATTTGAAATGTGCAAGCTTTCCAATTCCTGTTGATCCAAAAAGGTGTTAAACCCACATCTTGCGTTGTTAATGTTAACTGTCACAGGACCAGTCACGAAAACATACACCACTGACACAATGGAGAGTTCAGTCTGACCTTTCTTATCCTACACTTAAGGTATATAACTGACCTCGGTCTGTGTTAGCCTCACTTCTTCTGCTTCTGACTTCTTGCTCTCTGCTATTTTTGCGCTCCAGCCTTTTGATATCTATTGTAATACTCAGAATAGACTTTTGATTGCTGGACCTCTGGTCTTTTGTATCAACAATGTATTTATGTATTAAATTTGCTTATCATTTATTCGTTATTGATTATTCATATTCTTCCATTTCAGTTTTCATCGACTTCTTCGACTGCCTGGATCTCATTGCATCAATTATATAATGCGGTTTGTTTAAAAGTATCTAATTCAATTTGGAATATCAATTTCTCACTCCATTTTTTCAGATCATGACGAAAAATTGTTTCTCAGTAGTCTACGCATGTAGTTTCTCTATTTATCTCATCTATTGGTTGCTAAATAAATATCAGCTTCAGATAAAGAGATGGCTAGTGCTGTACGACAAACATTGTGTTAAAAAAAGAAATGTAACACTTTATTTTGATAGTGCACTTTAGATAAGTAACTTTACAACTACACATCAACTAACTCTTAAGAGTATTAGTAGACTGTTTGGTTAGGGTTAGTAGAATAAGTTGACATGTATATGCAAATTTACTTGTAGTTAATGTCTAAAGTGGGTTATTGAAATAAAGTGTAACCAAAAGAACAATCAGCATCGAATCTGAGGCTCAGTAACTGATGACTTAAAAATGGAGCCCGCTTCCTCTACCTGCACAAACTTCTCCTTTAAGTGTGTGCAATTGACAAATAACAGCAACAAAATGGCTGTGCTGTCTTACCAGAGTACAAAACTTTTATATATTCACATACACTCTAGTGACTTTGAAAGTACCTTGAACTATTACTGCAAGTGAATTCACCTGATATTTTATACTAACCAACAATTAGAGGATTAGAACAGGAAAGCACTCTTTAATTGTAACTATATAAACACATATTGTATACAGCATCTATATGTGGGTGTATATGTTTGTTTGAAGCTGTTTTACCAGGTATAAGATGGCAAACGAGAGGGTCGCCGTGTTGACATGGCAGCAGAGTGTACGTGTTCCAGACATCTTTCTCTTCGACTCTTTCACAATGTGACAAACGAGCTGAAACACTCAGTACCAAACACATGAATCCTCCCTGCTGTTACCGACGAATACGCATGCACTTGTAGGTTCCTGTGTGGTGGTCAGGGCTTCCTGTGTACTTTCCGAGAACTTCACGAATTATTTTTATCATCATCTTAGGCTGATTTTAGTGATTTTTATCATGAGTTACACCATGAGATTCTACACTTTAAATTCGTAGAAGGATGCATCACATTATTTGATGAACAACTCTACATAAAAGATAAAATTAAACATTGATAGTGAGAAATGACTAACATATTTATGGCCAAACACACTCTAAAAAATCTTATTTTTTCTACCCAAGTCCTGGGTTGAGACTTTTGAGTCATTTTTTTGGGTTTTCCCAGTGTTTGGATAGTTTTTGTTACTCAGCTCCTGCGTCAGACATAACCCAGGGGTTGAGTTATTTATCACGTTTTTTGCGGCCTCTTCAGGAGAGAGCGGTGCAGCTGCATGTCTTCGGTAAAATACATGTTTGTGTATGTTTTATTTTATCTAAAAATTCGTTATTGTTCTGTATATCGTTTAATTTTATGCAAAGCAACATAAAATATGTTCTCAGAGTTGTACACTGATTATTTATGGACAGGTTATGGAGTCAGTTACAGCATTTTTCGGCTACGAGTGAAACGCAAGCGGCGGTCTGTAGTTAGCAGTTCCCCCGCTGAACGCGAGTCATCTCCGGCACGAGATCCAGTGCCGTTACGGTGGAAACAGGACAACAGAGACCGGTCGATAACACTTGAATTACTTATAAATGTTTAACTTTTACTTCTAATATTTGTTAGACGAGCTTAAATGTAGGCAATATGTATTAAAAACGTATAAAATATGCTATAATATAAAATATGATCAAAAATAAAGGAATTATCATGCAAACCAGTGGCTGTGTGGAGTATTTAAAAAAGTTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU261373 lncRNA downstream 78035 915135 ~ 915357 (-) True G230328
TU261161 lncRNA downstream 105233 885254 ~ 888159 (-) False G230145
TU261160 lncRNA downstream 105233 885802 ~ 888159 (-) True G230145
TU261165 lncRNA downstream 107167 863958 ~ 886225 (-) True G230148
TU261162 lncRNA downstream 107298 885254 ~ 886094 (-) False G230145
TU261380 lncRNA upstream 8815 1005266 ~ 1005502 (-) True G230335
TU261382 lncRNA upstream 19272 1015723 ~ 1019141 (-) True G230336
TU261387 lncRNA upstream 24223 1020674 ~ 1020880 (-) True G230341
TU261388 lncRNA upstream 33170 1029621 ~ 1029829 (-) True G230342
TU261229 lncRNA upstream 59099 1055550 ~ 1057442 (-) True G230189
CI01000054_00979998_00989171.mRNA mRNA downstream 4221 979998 ~ 989171 (-) True CI01000054_00979998_00989171
CI01000054_00974025_00979306.mRNA mRNA downstream 14086 973900 ~ 979306 (-) True CI01000054_00974025_00979306
CI01000054_00965111_00970121.mRNA mRNA downstream 23271 964642 ~ 970121 (-) True CI01000054_00965111_00970121
CI01000054_00929337_00955240.mRNA mRNA downstream 37718 929132 ~ 955674 (-) True CI01000054_00929337_00955240
CI01000054_00924015_00926256.mRNA mRNA downstream 67136 923734 ~ 926256 (-) True CI01000054_00924015_00926256
CI01000054_01115294_01116274.mRNA mRNA upstream 118242 1114693 ~ 1116822 (-) True CI01000054_01115294_01116274
CI01000054_01151083_01156699.mRNA mRNA upstream 154273 1150724 ~ 1158172 (-) True CI01000054_01151083_01156699
CI01000054_01203148_01209012.mRNA mRNA upstream 206454 1202905 ~ 1209135 (-) True CI01000054_01203148_01209012
CI01000054_01246516_01250511.mRNA mRNA upstream 248430 1244881 ~ 1251249 (-) True CI01000054_01246516_01250511
CI01000054_01257527_01259314.mRNA mRNA upstream 261076 1257527 ~ 1259314 (-) True CI01000054_01257527_01259314
TU261218 other upstream 189082 1185533 ~ 1230135 (-) False G230178
TU261209 other upstream 229972 1226423 ~ 1230135 (-) False G230178
TU261213 other upstream 229972 1226423 ~ 1230135 (-) False G230178
TU262094 other upstream 1840786 2837237 ~ 2837682 (-) True G230923
TU262064 other upstream 1857690 2854141 ~ 2859545 (-) False G230906

Expression Profile