RNA id: TU260862


Basic Information

Item Value
RNA id TU260862
length 1144
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G229872
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 1058008 ~ 1059151 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAACAACTCAAATGTTCACAGAATTACTGGGATAAAAGATTATAGTTTTGATAAGCACTGATGTCTACGGTAAATCACCTTTTGAAAGTAAATTGACGCTTCAAATAAAGATTGTATCATTTCTATCATTACACCAGTAGGTGGTGACATGTGACTGAATGGATTTGTCATTGAATCATCCATTCAAGAGTTTCTTTTAAAAAAACGCTGATTCATAATGTAACAAGTGAAGTCTTAAAGGGTTAGTTCACCCAAAAATGAAAATAATGTCATTTATTACTAACCCTCATGTCGTTCTACACCCGTAAGACCTTCGTTCATCTTCAGAACACAAATAGAGTACCTCAGGGATGACGTGTTTTTGTAGGCAAAACCCGGAAGCGAGTTAGCATTTTAGGACTTCCGGTTCCATCGCCCTAAAGTCTATGGGTTTTTTGAATGGGTTTTTGCTAAATCGCATGAAATAAGGTCTGTGGTTAACAAAGCCTCTAAATATTTTCACGTTTTGATCTATGACATAAAACACACCAGTTATAACCCGCTCGTGATTTTTTAAACCTTTATTGTGTCTTAAAAATGGCGGTTGCTAACAAATTGCTAAAAGGGACTACTTCCTTTGGCGGGGACTTTAGACGTCATCATGACAAACAGGACATTCGGACAGCATTTCTCATGAAAAAGTGGATAAGTATTCATACACAGCGCAGATCATAATCAGCGAGCATGTTTTTAAATAAAATTGTTTTCTAAATAAAGTGTGAGGAAGCTTGGTGGTGGTCACGTTGATCCGCGACCATGGTGTGCTTTAGTCCGTTTATAGCCTACTGTTAGCTTTTTATATCTGACGACTTTATTTAGGCTTCAAAATGTATAAATGTTGTGTTAACTTGTAAAGATTATCTTGATAGACAAAACGTGTAAGTGTCATAACCCTTTGTTAAACACAGAGCTTATTTTTTGCGATTTTCCAAGTCTATGGGAAAAATGCATTGGCTTTCGATCGAGGGAACCCGTGCGCCGCTAACTTCCAGGTTGGCCTACAAAAACACGTCATCCCTGAGGTACTCTATTAAGATATTTTGATTAAATCCGATGGCTCAGTGAAGCCTCTATAGACAGCAATGCCTTTGAAAATCTCAAGATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260854 lncRNA upstream 44607 1013175 ~ 1013401 (+) True G229865
TU260853 lncRNA upstream 46880 1010721 ~ 1011128 (+) True G229864
TU260835 lncRNA upstream 72855 983600 ~ 985153 (+) True G229849
TU260828 lncRNA upstream 76096 978703 ~ 981912 (+) False G229848
TU260830 lncRNA upstream 77759 978703 ~ 980249 (+) True G229848
TU260874 lncRNA downstream 62941 1122092 ~ 1122351 (+) True G229883
TU260784 lncRNA downstream 84982 1144133 ~ 1144557 (+) True G229806
TU260748 lncRNA downstream 87139 1146290 ~ 1151146 (+) True G229770
TU260809 lncRNA downstream 102051 1161202 ~ 1161520 (+) True G229831
TU260887 lncRNA downstream 109460 1168611 ~ 1168843 (+) True G229891
CI01000054_01042925_01056338.mRNA mRNA upstream 1447 1042891 ~ 1056561 (+) True CI01000054_01042925_01056338
CI01000054_01007770_01028369.mRNA mRNA upstream 29176 1007652 ~ 1028832 (+) True CI01000054_01007770_01028369
CI01000054_00992036_01004247.mRNA mRNA upstream 53616 992036 ~ 1004392 (+) True CI01000054_00992036_01004247
CI01000054_00916253_00919736.mRNA mRNA upstream 138022 916253 ~ 919986 (+) False CI01000054_00916253_00919736
CI01000054_00885259_00886020.mRNA mRNA upstream 171988 885259 ~ 886020 (+) True CI01000054_00885259_00886020
CI01000054_01087465_01101501.mRNA mRNA downstream 27781 1086932 ~ 1101774 (+) True CI01000054_01087465_01101501
CI01000054_01103702_01106852.mRNA mRNA downstream 44290 1103441 ~ 1106852 (+) True CI01000054_01103702_01106852
CI01000054_01122882_01126143.mRNA mRNA downstream 63731 1122882 ~ 1126784 (+) True CI01000054_01122882_01126143
CI01000054_01133011_01143370.mRNA mRNA downstream 73860 1133011 ~ 1143612 (+) True CI01000054_01133011_01143370
CI01000054_01173734_01187846.mRNA mRNA downstream 114583 1173734 ~ 1188947 (+) True CI01000054_01173734_01187846
TU260714 other downstream 167184 1227807 ~ 1227900 (+) True G229740
TU260738 other downstream 207199 1266350 ~ 1273750 (+) True G229760
TU260932 other downstream 337929 1397080 ~ 1407130 (+) False G229936
TU260728 other downstream 519284 1578435 ~ 1582069 (+) True G229750
TU260765 other downstream 591809 1650960 ~ 1661565 (+) True CI01000054_01650242_01665628

Expression Profile