RNA id: TU260874


Basic Information

Item Value
RNA id TU260874
length 260
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G229883
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 1122092 ~ 1122351 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAAAGTATCTACATTGGCAATATATTTTGGCCATTTTTGTATATTTCAAAACATAAAAACAAATATTGTGACGTTCCTTTCGGCTGTCATTGTTTTTCTTTTCCCTTTTGGTATGTGTTTGTGTGTTATATATAATATACGCATCCACAGCCTTTTACCTTACACTAGAATTGTATCCTAAAACCTTTTCTGGACCACCAGAGAGATAGACTAACATAAAGAAGGTCAAAAGAACCAGTATGGACCTGCATCTGTTGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260862 lncRNA upstream 62941 1058008 ~ 1059151 (+) True G229872
TU260854 lncRNA upstream 108691 1013175 ~ 1013401 (+) True G229865
TU260853 lncRNA upstream 110964 1010721 ~ 1011128 (+) True G229864
TU260835 lncRNA upstream 136939 983600 ~ 985153 (+) True G229849
TU260828 lncRNA upstream 140180 978703 ~ 981912 (+) False G229848
TU260784 lncRNA downstream 21782 1144133 ~ 1144557 (+) True G229806
TU260748 lncRNA downstream 23939 1146290 ~ 1151146 (+) True G229770
TU260809 lncRNA downstream 38851 1161202 ~ 1161520 (+) True G229831
TU260887 lncRNA downstream 46260 1168611 ~ 1168843 (+) True G229891
TU260757 lncRNA downstream 121423 1243774 ~ 1244341 (+) True G229779
CI01000054_01103702_01106852.mRNA mRNA upstream 15240 1103441 ~ 1106852 (+) True CI01000054_01103702_01106852
CI01000054_01087465_01101501.mRNA mRNA upstream 20318 1086932 ~ 1101774 (+) True CI01000054_01087465_01101501
CI01000054_01042925_01056338.mRNA mRNA upstream 65531 1042891 ~ 1056561 (+) True CI01000054_01042925_01056338
CI01000054_01007770_01028369.mRNA mRNA upstream 93260 1007652 ~ 1028832 (+) True CI01000054_01007770_01028369
CI01000054_00992036_01004247.mRNA mRNA upstream 117700 992036 ~ 1004392 (+) True CI01000054_00992036_01004247
CI01000054_01122882_01126143.mRNA mRNA downstream 531 1122882 ~ 1126784 (+) True CI01000054_01122882_01126143
CI01000054_01133011_01143370.mRNA mRNA downstream 10660 1133011 ~ 1143612 (+) True CI01000054_01133011_01143370
CI01000054_01173734_01187846.mRNA mRNA downstream 51383 1173734 ~ 1188947 (+) True CI01000054_01173734_01187846
CI01000054_01190021_01201007.mRNA mRNA downstream 67670 1190021 ~ 1201723 (+) True CI01000054_01190021_01201007
CI01000054_01212755_01219670.mRNA mRNA downstream 90195 1212546 ~ 1220783 (+) True CI01000054_01212755_01219670
TU260714 other downstream 103984 1227807 ~ 1227900 (+) True G229740
TU260738 other downstream 143999 1266350 ~ 1273750 (+) True G229760
TU260932 other downstream 274729 1397080 ~ 1407130 (+) False G229936
TU260728 other downstream 456084 1578435 ~ 1582069 (+) True G229750
TU260765 other downstream 528609 1650960 ~ 1661565 (+) True CI01000054_01650242_01665628

Expression Profile