RNA id: TCONS_00018889



Basic Information


Item Value
RNA id TCONS_00018889
length 565
lncRNA type antisense_over
GC content 0.47
exon number 2
gene id XLOC_008319
representative False

Chromosome Information


Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 8762474 ~ 8765029 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


AGCATGCCTCCCTCTCTCTGCTGTTTCACTCCTTTATCTGCAGCGGCGGCGGCTCACAAAATTTATCAAGACGAAGAAGAGGAAGAACAGTGTTAATAGTCCAGGAGTAGTCCCACAAACATCGGCGTTTCCCTTTCTGCAGCTGTCCGAAAGCGACACAATCTCTTCCTCTCAATGACTGGTCGTCTGCTCAAAGTTTTCAACAATCTGATTTGCGATTCTCTCCCAAATATGCGACAAATAGCatcgagagagagaaaaaatgaaTATCAGATCACTGTTTTCTTGTTGGAAAGGAGTGGGCGTTGAAGGAGAAAGATTGGGGGGGAAACGAGCTTTGTATCGCGGTGTCTTTCCCTTGGGTTCACCACGTTGTTTTTGAGCACTTATAATTTCCTTTGTTGTGTCCAAAACATCTCGAGTTGTCCATGTTTTATCACCGGCGTCAGCACGCGGTCCGAGAGTCTCCGGCGGAGGGGGAAAAAGAGGACTTCTTCCAGGATAAAGGCGAAATTTGGTGAcgAGAAGTGAAGAAACTGTGAAAGGTCTCTGCTCCCACCTCTAG

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00016691 lncRNA upstream 956554 7805779 ~ 7805920 (+) True XLOC_008312
TCONS_00018758 lncRNA upstream 1024943 7734489 ~ 7737531 (+) True XLOC_008311
TCONS_00018757 lncRNA upstream 1621592 7140410 ~ 7140882 (+) True XLOC_008308
TCONS_00018888 lncRNA upstream 1886926 6867276 ~ 6875548 (+) True XLOC_008306
TCONS_00018756 lncRNA upstream 1976419 6785649 ~ 6786055 (+) True XLOC_008304
TCONS_00016708 lncRNA downstream 441151 9205264 ~ 9211131 (+) True XLOC_008325
TCONS_00016715 lncRNA downstream 650040 9414153 ~ 9418151 (+) True XLOC_008329
TCONS_00016716 lncRNA downstream 687865 9451978 ~ 9457382 (+) True XLOC_008330
TCONS_00018759 lncRNA downstream 876574 9640687 ~ 9649456 (+) False XLOC_008331
TCONS_00018890 lncRNA downstream 883505 9647618 ~ 9648249 (+) True XLOC_008331
TCONS_00016698 mRNA upstream 362383 8394819 ~ 8400091 (+) True XLOC_008316
TCONS_00016697 mRNA upstream 379477 8335600 ~ 8382997 (+) True XLOC_008315
TCONS_00016696 mRNA upstream 380963 8335600 ~ 8381511 (+) False XLOC_008315
TCONS_00016695 mRNA upstream 526945 8192720 ~ 8235529 (+) True XLOC_008314
TCONS_00016694 mRNA upstream 527528 8192715 ~ 8234946 (+) False XLOC_008314
TCONS_00016702 mRNA downstream 3537 8767650 ~ 8799977 (+) True XLOC_008320
TCONS_00016704 mRNA downstream 288946 9053059 ~ 9069172 (+) True XLOC_008322
TCONS_00016705 mRNA downstream 308708 9072821 ~ 9089507 (+) True XLOC_008323
TCONS_00016706 mRNA downstream 353217 9117330 ~ 9184449 (+) False XLOC_008324
TCONS_00016707 mRNA downstream 356941 9121054 ~ 9184057 (+) True XLOC_008324
TCONS_00016700 other upstream 30608 8731752 ~ 8731866 (+) True XLOC_008318
TCONS_00016699 other upstream 79537 8682822 ~ 8682937 (+) True XLOC_008317
TCONS_00016681 other upstream 1990354 6770586 ~ 6772120 (+) True XLOC_008302
TCONS_00016680 other upstream 2035392 6678521 ~ 6727082 (+) True XLOC_008301
TCONS_00016677 other upstream 2203289 6559050 ~ 6559185 (+) True XLOC_008299
TCONS_00016703 other downstream 274937 9039050 ~ 9039164 (+) True XLOC_008321
TCONS_00016712 other downstream 539696 9303809 ~ 9311478 (+) True XLOC_008326
TCONS_00016719 other downstream 1131745 9895858 ~ 9895986 (+) True XLOC_008335
TCONS_00016731 other downstream 2801278 11565391 ~ 11565509 (+) True XLOC_008343
TCONS_00016757 other downstream 4760761 13524874 ~ 13524988 (+) True XLOC_008360

Expression Profile


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