RNA id: TU260887


Basic Information

Item Value
RNA id TU260887
length 233
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G229891
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 1168611 ~ 1168843 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTCAAGTGTAATTTGTGAGATTTGTTGTATTTTGAATCCAATCTTTCTTTGTAAAAGGCATAAAGTTTATCATACTGATTTCAAAGTTAAGGATTTATTAGTTTAAATATACATTGAACCAAACACTATAATAACATCTTAGTTGATAATTCAATATACTTTATCTTTCACAAAACATCCATGTTTCGGTCGTGACTGCACATTTTCGGTAGTGACAGTAATGCGTTGTAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260809 lncRNA upstream 7091 1161202 ~ 1161520 (+) True G229831
TU260748 lncRNA upstream 17465 1146290 ~ 1151146 (+) True G229770
TU260784 lncRNA upstream 24054 1144133 ~ 1144557 (+) True G229806
TU260874 lncRNA upstream 46260 1122092 ~ 1122351 (+) True G229883
TU260862 lncRNA upstream 109460 1058008 ~ 1059151 (+) True G229872
TU260757 lncRNA downstream 74931 1243774 ~ 1244341 (+) True G229779
TU260915 lncRNA downstream 136034 1304877 ~ 1305133 (+) True G229919
TU260723 lncRNA downstream 137527 1306370 ~ 1311971 (+) True G229745
TU260724 lncRNA downstream 145789 1314632 ~ 1331530 (+) True G229746
TU260929 lncRNA downstream 221924 1390767 ~ 1391918 (+) True G229933
CI01000054_01133011_01143370.mRNA mRNA upstream 24999 1133011 ~ 1143612 (+) True CI01000054_01133011_01143370
CI01000054_01122882_01126143.mRNA mRNA upstream 41827 1122882 ~ 1126784 (+) True CI01000054_01122882_01126143
CI01000054_01103702_01106852.mRNA mRNA upstream 61759 1103441 ~ 1106852 (+) True CI01000054_01103702_01106852
CI01000054_01087465_01101501.mRNA mRNA upstream 66837 1086932 ~ 1101774 (+) True CI01000054_01087465_01101501
CI01000054_01042925_01056338.mRNA mRNA upstream 112050 1042891 ~ 1056561 (+) True CI01000054_01042925_01056338
CI01000054_01173734_01187846.mRNA mRNA downstream 4891 1173734 ~ 1188947 (+) True CI01000054_01173734_01187846
CI01000054_01190021_01201007.mRNA mRNA downstream 21178 1190021 ~ 1201723 (+) True CI01000054_01190021_01201007
CI01000054_01212755_01219670.mRNA mRNA downstream 43703 1212546 ~ 1220783 (+) True CI01000054_01212755_01219670
CI01000054_01227110_01229796.mRNA mRNA downstream 57536 1226379 ~ 1230058 (+) False CI01000054_01227110_01229796
CI01000054_01231236_01238870.mRNA mRNA downstream 61946 1230789 ~ 1239069 (+) True CI01000054_01231236_01238870
TU260714 other downstream 57492 1227807 ~ 1227900 (+) True G229740
TU260738 other downstream 97507 1266350 ~ 1273750 (+) True G229760
TU260932 other downstream 228237 1397080 ~ 1407130 (+) False G229936
TU260728 other downstream 409592 1578435 ~ 1582069 (+) True G229750
TU260765 other downstream 482117 1650960 ~ 1661565 (+) True CI01000054_01650242_01665628

Expression Profile