RNA id: TU260915


Basic Information

Item Value
RNA id TU260915
length 257
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G229919
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 1304877 ~ 1305133 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCCAATATGGCGCTGACATCTTGTGCTGATTTGAGACCTGAGTCTGCGCAGTAGTGAGCATGAAGTGGAGCCGCGCGCTATCAACACTCCTGCAGAATCGTTTAGTACAGTTTACAGCAGGACAACTCATTATGTCGGTGTGAAATAAACAGTTATGGAAATGTAGAAATTAAAGTTAAAGCTCTAATCTCCTCCGAAAAAGTCTGTTGGTACCTACTTGGCTCAGAGAAGCTGTCAATCATGACGTCAGACCCCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260757 lncRNA upstream 60536 1243774 ~ 1244341 (+) True G229779
TU260887 lncRNA upstream 136034 1168611 ~ 1168843 (+) True G229891
TU260809 lncRNA upstream 143357 1161202 ~ 1161520 (+) True G229831
TU260748 lncRNA upstream 153731 1146290 ~ 1151146 (+) True G229770
TU260784 lncRNA upstream 160320 1144133 ~ 1144557 (+) True G229806
TU260723 lncRNA downstream 1237 1306370 ~ 1311971 (+) True G229745
TU260724 lncRNA downstream 9499 1314632 ~ 1331530 (+) True G229746
TU260929 lncRNA downstream 85634 1390767 ~ 1391918 (+) True G229933
TU260933 lncRNA downstream 98041 1403174 ~ 1407130 (+) True G229936
TU260800 lncRNA downstream 108432 1413565 ~ 1413922 (+) True G229822
CI01000054_01231236_01238870.mRNA mRNA upstream 65808 1230789 ~ 1239069 (+) True CI01000054_01231236_01238870
CI01000054_01227110_01229796.mRNA mRNA upstream 74819 1226379 ~ 1230058 (+) False CI01000054_01227110_01229796
CI01000054_01212755_01219670.mRNA mRNA upstream 84094 1212546 ~ 1220783 (+) True CI01000054_01212755_01219670
CI01000054_01190021_01201007.mRNA mRNA upstream 103154 1190021 ~ 1201723 (+) True CI01000054_01190021_01201007
CI01000054_01173734_01187846.mRNA mRNA upstream 115930 1173734 ~ 1188947 (+) True CI01000054_01173734_01187846
CI01000054_01353780_01357766.mRNA mRNA downstream 48435 1353568 ~ 1357859 (+) True CI01000054_01353780_01357766
CI01000054_01368287_01374709.mRNA mRNA downstream 63154 1368287 ~ 1375026 (+) True CI01000054_01368287_01374709
CI01000054_01378423_01387679.mRNA mRNA downstream 73160 1378293 ~ 1388263 (+) True CI01000054_01378423_01387679
CI01000054_01535826_01544666.mRNA mRNA downstream 230693 1535826 ~ 1545550 (+) True CI01000054_01535826_01544666
CI01000054_01556797_01565522.mRNA mRNA downstream 251664 1556797 ~ 1565787 (+) True CI01000054_01556797_01565522
TU260738 other upstream 31127 1266350 ~ 1273750 (+) True G229760
TU260714 other upstream 74548 1227807 ~ 1227900 (+) True G229740
TU260932 other downstream 91947 1397080 ~ 1407130 (+) False G229936
TU260728 other downstream 273302 1578435 ~ 1582069 (+) True G229750
TU260765 other downstream 345827 1650960 ~ 1661565 (+) True CI01000054_01650242_01665628
TU261003 other downstream 420536 1725669 ~ 1726793 (+) True CI01000054_01725792_01726688
TU261855 other downstream 984698 2289831 ~ 2304382 (+) True CI01000054_02289802_02330591

Expression Profile