Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU260724 |
| length | 2113 |
| lncRNA type | antisense_over |
| GC content | 0.57 |
| exon number | 13 |
| gene id | G229746 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000054 |
| NCBI id | null |
| chromosome length | 13006764 |
| location | 1314632 ~ 1331530 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU260723 | lncRNA | upstream | 2661 | 1306370 ~ 1311971 (+) | True | G229745 |
| TU260915 | lncRNA | upstream | 9499 | 1304877 ~ 1305133 (+) | True | G229919 |
| TU260757 | lncRNA | upstream | 70291 | 1243774 ~ 1244341 (+) | True | G229779 |
| TU260887 | lncRNA | upstream | 145789 | 1168611 ~ 1168843 (+) | True | G229891 |
| TU260809 | lncRNA | upstream | 153112 | 1161202 ~ 1161520 (+) | True | G229831 |
| TU260929 | lncRNA | downstream | 59237 | 1390767 ~ 1391918 (+) | True | G229933 |
| TU260933 | lncRNA | downstream | 71644 | 1403174 ~ 1407130 (+) | True | G229936 |
| TU260800 | lncRNA | downstream | 82035 | 1413565 ~ 1413922 (+) | True | G229822 |
| TU260740 | lncRNA | downstream | 126264 | 1457794 ~ 1459261 (+) | True | G229762 |
| TU260770 | lncRNA | downstream | 136749 | 1468279 ~ 1472052 (+) | True | G229792 |
| CI01000054_01231236_01238870.mRNA | mRNA | upstream | 75563 | 1230789 ~ 1239069 (+) | True | CI01000054_01231236_01238870 |
| CI01000054_01227110_01229796.mRNA | mRNA | upstream | 84574 | 1226379 ~ 1230058 (+) | False | CI01000054_01227110_01229796 |
| CI01000054_01212755_01219670.mRNA | mRNA | upstream | 93849 | 1212546 ~ 1220783 (+) | True | CI01000054_01212755_01219670 |
| CI01000054_01190021_01201007.mRNA | mRNA | upstream | 112909 | 1190021 ~ 1201723 (+) | True | CI01000054_01190021_01201007 |
| CI01000054_01173734_01187846.mRNA | mRNA | upstream | 125685 | 1173734 ~ 1188947 (+) | True | CI01000054_01173734_01187846 |
| CI01000054_01353780_01357766.mRNA | mRNA | downstream | 22038 | 1353568 ~ 1357859 (+) | True | CI01000054_01353780_01357766 |
| CI01000054_01368287_01374709.mRNA | mRNA | downstream | 36757 | 1368287 ~ 1375026 (+) | True | CI01000054_01368287_01374709 |
| CI01000054_01378423_01387679.mRNA | mRNA | downstream | 46763 | 1378293 ~ 1388263 (+) | True | CI01000054_01378423_01387679 |
| CI01000054_01535826_01544666.mRNA | mRNA | downstream | 204296 | 1535826 ~ 1545550 (+) | True | CI01000054_01535826_01544666 |
| CI01000054_01556797_01565522.mRNA | mRNA | downstream | 225267 | 1556797 ~ 1565787 (+) | True | CI01000054_01556797_01565522 |
| TU260738 | other | upstream | 40882 | 1266350 ~ 1273750 (+) | True | G229760 |
| TU260714 | other | upstream | 84303 | 1227807 ~ 1227900 (+) | True | G229740 |
| TU260932 | other | downstream | 65550 | 1397080 ~ 1407130 (+) | False | G229936 |
| TU260728 | other | downstream | 246905 | 1578435 ~ 1582069 (+) | True | G229750 |
| TU260765 | other | downstream | 319430 | 1650960 ~ 1661565 (+) | True | CI01000054_01650242_01665628 |
| TU261003 | other | downstream | 394139 | 1725669 ~ 1726793 (+) | True | CI01000054_01725792_01726688 |
| TU261855 | other | downstream | 958301 | 2289831 ~ 2304382 (+) | True | CI01000054_02289802_02330591 |
