RNA id: TU260933


Basic Information

Item Value
RNA id TU260933
length 435
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G229936
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 1397080 ~ 1407130 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAAAAAGCTAAAGTTTAAAATGATTGAAGGTATTGGATCTGGATTATCACCTGGCTGGATTTATGACAATCCTCAGTGTCTGTGGTACAACATGGAGGTGGAGTCTCCTCCATAGTGCATTCTGGGAGATTTTCAGATTCTCCTGTTTCTGACATCTTGAAATTTGCAGATCCAGAGGTCATATCAGTTATAGGCCACCATATGCGCCATGACCGTCCAAGCCAATTAGTACAGAGACAAGATGTCTTCTTTTCCCTTTTTTTCTTGCTCTGCTCTTCTCTTCTCTTGCCAGAACAGATGGCTAGATCCTGTATGTAACACGACAGGAACAAACAACTGAAATCGTCAGAAATGAGCGCTTGTGCCGCCGGTGAGCTTGTCAAACATCTTCTGTTTCTGACAGCAGAGCGCGTGCAGACTCACGCCACCCGCTTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260929 lncRNA upstream 11256 1390767 ~ 1391918 (+) True G229933
TU260724 lncRNA upstream 71644 1314632 ~ 1331530 (+) True G229746
TU260723 lncRNA upstream 91203 1306370 ~ 1311971 (+) True G229745
TU260915 lncRNA upstream 98041 1304877 ~ 1305133 (+) True G229919
TU260757 lncRNA upstream 158833 1243774 ~ 1244341 (+) True G229779
TU260800 lncRNA downstream 6435 1413565 ~ 1413922 (+) True G229822
TU260740 lncRNA downstream 50664 1457794 ~ 1459261 (+) True G229762
TU260770 lncRNA downstream 61149 1468279 ~ 1472052 (+) True G229792
TU260741 lncRNA downstream 65061 1472191 ~ 1474920 (+) True G229763
TU260951 lncRNA downstream 94185 1501315 ~ 1501896 (+) True G229953
CI01000054_01378423_01387679.mRNA mRNA upstream 14911 1378293 ~ 1388263 (+) True CI01000054_01378423_01387679
CI01000054_01368287_01374709.mRNA mRNA upstream 28148 1368287 ~ 1375026 (+) True CI01000054_01368287_01374709
CI01000054_01353780_01357766.mRNA mRNA upstream 45315 1353568 ~ 1357859 (+) True CI01000054_01353780_01357766
CI01000054_01231236_01238870.mRNA mRNA upstream 164105 1230789 ~ 1239069 (+) True CI01000054_01231236_01238870
CI01000054_01227110_01229796.mRNA mRNA upstream 173116 1226379 ~ 1230058 (+) False CI01000054_01227110_01229796
CI01000054_01535826_01544666.mRNA mRNA downstream 128696 1535826 ~ 1545550 (+) True CI01000054_01535826_01544666
CI01000054_01556797_01565522.mRNA mRNA downstream 149667 1556797 ~ 1565787 (+) True CI01000054_01556797_01565522
CI01000054_01568746_01575755.mRNA mRNA downstream 161616 1568746 ~ 1575755 (+) True CI01000054_01568746_01575755
CI01000054_01578022_01579167.mRNA mRNA downstream 170892 1578022 ~ 1579356 (+) False CI01000054_01578022_01579167
CI01000054_01589927_01595736.mRNA mRNA downstream 181838 1588968 ~ 1595857 (+) False CI01000054_01589927_01595736
TU260738 other upstream 129424 1266350 ~ 1273750 (+) True G229760
TU260714 other upstream 172845 1227807 ~ 1227900 (+) True G229740
TU260728 other downstream 171305 1578435 ~ 1582069 (+) True G229750
TU260765 other downstream 243830 1650960 ~ 1661565 (+) True CI01000054_01650242_01665628
TU261003 other downstream 318539 1725669 ~ 1726793 (+) True CI01000054_01725792_01726688
TU261855 other downstream 882701 2289831 ~ 2304382 (+) True CI01000054_02289802_02330591
TU261835 other downstream 1671372 3078502 ~ 3087392 (+) True G230689

Expression Profile