RNA id: TU260770


Basic Information

Item Value
RNA id TU260770
length 216
lncRNA type antisense_over
GC content 0.49
exon number 2
gene id G229792
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 1468279 ~ 1472052 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGACGTCTAGGGCTTTCTGTACTTTGGCTTGTACTGAGCCAAGCAGGTCTGCTCCCATTTTCTTCAGCAGTTGTGTGAGCAGCACAAAGAGCCAGTCCTGCAGATCCTCCTTATGAACCGCAATGAAGTCCACAAGTGTCTCCAGAAACATGCTGAACACTACCTTGCTGTGTGGGTCTGCGAACATCCTGGTGAAAATTTCACATAACCTCTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260740 lncRNA upstream 9018 1457794 ~ 1459261 (+) True G229762
TU260800 lncRNA upstream 54357 1413565 ~ 1413922 (+) True G229822
TU260933 lncRNA upstream 61149 1403174 ~ 1407130 (+) True G229936
TU260929 lncRNA upstream 76361 1390767 ~ 1391918 (+) True G229933
TU260724 lncRNA upstream 136749 1314632 ~ 1331530 (+) True G229746
TU260741 lncRNA downstream 139 1472191 ~ 1474920 (+) True G229763
TU260951 lncRNA downstream 29263 1501315 ~ 1501896 (+) True G229953
TU260952 lncRNA downstream 31392 1503444 ~ 1503652 (+) True G229954
TU260953 lncRNA downstream 32272 1504324 ~ 1504723 (+) True G229955
TU260789 lncRNA downstream 35981 1508033 ~ 1508480 (+) True G229811
CI01000054_01378423_01387679.mRNA mRNA upstream 80016 1378293 ~ 1388263 (+) True CI01000054_01378423_01387679
CI01000054_01368287_01374709.mRNA mRNA upstream 93253 1368287 ~ 1375026 (+) True CI01000054_01368287_01374709
CI01000054_01353780_01357766.mRNA mRNA upstream 110420 1353568 ~ 1357859 (+) True CI01000054_01353780_01357766
CI01000054_01231236_01238870.mRNA mRNA upstream 229210 1230789 ~ 1239069 (+) True CI01000054_01231236_01238870
CI01000054_01227110_01229796.mRNA mRNA upstream 238221 1226379 ~ 1230058 (+) False CI01000054_01227110_01229796
CI01000054_01535826_01544666.mRNA mRNA downstream 63774 1535826 ~ 1545550 (+) True CI01000054_01535826_01544666
CI01000054_01556797_01565522.mRNA mRNA downstream 84745 1556797 ~ 1565787 (+) True CI01000054_01556797_01565522
CI01000054_01568746_01575755.mRNA mRNA downstream 96694 1568746 ~ 1575755 (+) True CI01000054_01568746_01575755
CI01000054_01578022_01579167.mRNA mRNA downstream 105970 1578022 ~ 1579356 (+) False CI01000054_01578022_01579167
CI01000054_01589927_01595736.mRNA mRNA downstream 116916 1588968 ~ 1595857 (+) False CI01000054_01589927_01595736
TU260932 other upstream 61149 1397080 ~ 1407130 (+) False G229936
TU260738 other upstream 194529 1266350 ~ 1273750 (+) True G229760
TU260714 other upstream 237950 1227807 ~ 1227900 (+) True G229740
TU260728 other downstream 106383 1578435 ~ 1582069 (+) True G229750
TU260765 other downstream 178908 1650960 ~ 1661565 (+) True CI01000054_01650242_01665628
TU261003 other downstream 253617 1725669 ~ 1726793 (+) True CI01000054_01725792_01726688
TU261855 other downstream 817779 2289831 ~ 2304382 (+) True CI01000054_02289802_02330591
TU261835 other downstream 1606450 3078502 ~ 3087392 (+) True G230689

Expression Profile