RNA id: TU260789


Basic Information

Item Value
RNA id TU260789
length 448
lncRNA type antisense_over
GC content 0.38
exon number 1
gene id G229811
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 1508033 ~ 1508480 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CACTGGCAGTGGTAACTATCAAAAATGATCCGATGTGGTTCTATTCACCCAGCAGCTCAAACTATACAGCAGCTTTATGATTATTTTTTATTTGACAGCATGAATGGGTGTAAAACTGATGATCATTTCAGCCGTATGGTTAGCTCACCATGGGTGTTGTCGTCTGCTCCATCAGCTTCAAAATGAGACCTTGTGCCTGTTCTCGAACCTGATCCTTTGCATCACCCAGACGGTCAACTAACGCAGGCATCACTGAGGAAAAAAAACGAAAGAGGGGTTTAAAAAGATGATGTAATGATGCAGGGCTGCACAAGCTGGAAAAGACTGATTTTCTGATAAAAACTGTGATTGGCATTTAAAATAAAATGTTTGTGTGTGTGAAAATGTGATTCTTTTTTTTTTTTTTTTTTTTTTTTTAATAAAAGCTCCAGGTTGGCTGTGCTTGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260953 lncRNA upstream 3310 1504324 ~ 1504723 (+) True G229955
TU260952 lncRNA upstream 4381 1503444 ~ 1503652 (+) True G229954
TU260951 lncRNA upstream 6137 1501315 ~ 1501896 (+) True G229953
TU260741 lncRNA upstream 33113 1472191 ~ 1474920 (+) True G229763
TU260770 lncRNA upstream 35981 1468279 ~ 1472052 (+) True G229792
TU260954 lncRNA downstream 90 1508570 ~ 1509799 (+) True G229956
TU260742 lncRNA downstream 4664 1513144 ~ 1514004 (+) True G229764
TU260956 lncRNA downstream 7855 1516335 ~ 1518558 (+) True G229958
TU260793 lncRNA downstream 76857 1585337 ~ 1586014 (+) True G229815
TU260786 lncRNA downstream 79576 1588056 ~ 1588342 (+) True G229808
CI01000054_01378423_01387679.mRNA mRNA upstream 119770 1378293 ~ 1388263 (+) True CI01000054_01378423_01387679
CI01000054_01368287_01374709.mRNA mRNA upstream 133007 1368287 ~ 1375026 (+) True CI01000054_01368287_01374709
CI01000054_01353780_01357766.mRNA mRNA upstream 150174 1353568 ~ 1357859 (+) True CI01000054_01353780_01357766
CI01000054_01231236_01238870.mRNA mRNA upstream 268964 1230789 ~ 1239069 (+) True CI01000054_01231236_01238870
CI01000054_01227110_01229796.mRNA mRNA upstream 277975 1226379 ~ 1230058 (+) False CI01000054_01227110_01229796
CI01000054_01535826_01544666.mRNA mRNA downstream 27346 1535826 ~ 1545550 (+) True CI01000054_01535826_01544666
CI01000054_01556797_01565522.mRNA mRNA downstream 48317 1556797 ~ 1565787 (+) True CI01000054_01556797_01565522
CI01000054_01568746_01575755.mRNA mRNA downstream 60266 1568746 ~ 1575755 (+) True CI01000054_01568746_01575755
CI01000054_01578022_01579167.mRNA mRNA downstream 69542 1578022 ~ 1579356 (+) False CI01000054_01578022_01579167
CI01000054_01589927_01595736.mRNA mRNA downstream 80488 1588968 ~ 1595857 (+) False CI01000054_01589927_01595736
TU260932 other upstream 100903 1397080 ~ 1407130 (+) False G229936
TU260738 other upstream 234283 1266350 ~ 1273750 (+) True G229760
TU260714 other upstream 277704 1227807 ~ 1227900 (+) True G229740
TU260728 other downstream 69955 1578435 ~ 1582069 (+) True G229750
TU260765 other downstream 142480 1650960 ~ 1661565 (+) True CI01000054_01650242_01665628
TU261003 other downstream 217189 1725669 ~ 1726793 (+) True CI01000054_01725792_01726688
TU261855 other downstream 781351 2289831 ~ 2304382 (+) True CI01000054_02289802_02330591
TU261835 other downstream 1570022 3078502 ~ 3087392 (+) True G230689

Expression Profile