Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU260742 |
| length | 861 |
| lncRNA type | antisense_over |
| GC content | 0.51 |
| exon number | 1 |
| gene id | G229764 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000054 |
| NCBI id | null |
| chromosome length | 13006764 |
| location | 1513144 ~ 1514004 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU260954 | lncRNA | upstream | 3345 | 1508570 ~ 1509799 (+) | True | G229956 |
| TU260789 | lncRNA | upstream | 4664 | 1508033 ~ 1508480 (+) | True | G229811 |
| TU260953 | lncRNA | upstream | 8421 | 1504324 ~ 1504723 (+) | True | G229955 |
| TU260952 | lncRNA | upstream | 9492 | 1503444 ~ 1503652 (+) | True | G229954 |
| TU260951 | lncRNA | upstream | 11248 | 1501315 ~ 1501896 (+) | True | G229953 |
| TU260956 | lncRNA | downstream | 2331 | 1516335 ~ 1518558 (+) | True | G229958 |
| TU260793 | lncRNA | downstream | 71333 | 1585337 ~ 1586014 (+) | True | G229815 |
| TU260786 | lncRNA | downstream | 74052 | 1588056 ~ 1588342 (+) | True | G229808 |
| TU260967 | lncRNA | downstream | 90320 | 1604324 ~ 1604605 (+) | True | G229967 |
| TU260739 | lncRNA | downstream | 134291 | 1648295 ~ 1648954 (+) | True | CI01000054_01639395_01647833 |
| CI01000054_01378423_01387679.mRNA | mRNA | upstream | 124881 | 1378293 ~ 1388263 (+) | True | CI01000054_01378423_01387679 |
| CI01000054_01368287_01374709.mRNA | mRNA | upstream | 138118 | 1368287 ~ 1375026 (+) | True | CI01000054_01368287_01374709 |
| CI01000054_01353780_01357766.mRNA | mRNA | upstream | 155285 | 1353568 ~ 1357859 (+) | True | CI01000054_01353780_01357766 |
| CI01000054_01231236_01238870.mRNA | mRNA | upstream | 274075 | 1230789 ~ 1239069 (+) | True | CI01000054_01231236_01238870 |
| CI01000054_01227110_01229796.mRNA | mRNA | upstream | 283086 | 1226379 ~ 1230058 (+) | False | CI01000054_01227110_01229796 |
| CI01000054_01535826_01544666.mRNA | mRNA | downstream | 21822 | 1535826 ~ 1545550 (+) | True | CI01000054_01535826_01544666 |
| CI01000054_01556797_01565522.mRNA | mRNA | downstream | 42793 | 1556797 ~ 1565787 (+) | True | CI01000054_01556797_01565522 |
| CI01000054_01568746_01575755.mRNA | mRNA | downstream | 54742 | 1568746 ~ 1575755 (+) | True | CI01000054_01568746_01575755 |
| CI01000054_01578022_01579167.mRNA | mRNA | downstream | 64018 | 1578022 ~ 1579356 (+) | False | CI01000054_01578022_01579167 |
| CI01000054_01589927_01595736.mRNA | mRNA | downstream | 74964 | 1588968 ~ 1595857 (+) | False | CI01000054_01589927_01595736 |
| TU260932 | other | upstream | 106014 | 1397080 ~ 1407130 (+) | False | G229936 |
| TU260738 | other | upstream | 239394 | 1266350 ~ 1273750 (+) | True | G229760 |
| TU260714 | other | upstream | 282815 | 1227807 ~ 1227900 (+) | True | G229740 |
| TU260728 | other | downstream | 64431 | 1578435 ~ 1582069 (+) | True | G229750 |
| TU260765 | other | downstream | 136956 | 1650960 ~ 1661565 (+) | True | CI01000054_01650242_01665628 |
| TU261003 | other | downstream | 211665 | 1725669 ~ 1726793 (+) | True | CI01000054_01725792_01726688 |
| TU261855 | other | downstream | 775827 | 2289831 ~ 2304382 (+) | True | CI01000054_02289802_02330591 |
| TU261835 | other | downstream | 1564498 | 3078502 ~ 3087392 (+) | True | G230689 |
