RNA id: TCONS_00016705


Basic Information

Item Value
RNA id TCONS_00016705
length 2070
RNA type mRNA
GC content 0.47
exon number 9
gene id XLOC_008323
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 9072821 ~ 9089507 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTCATGCCTGAGCTCACTGAATTTCAAGCCGGTCCTTATGCTAATAACCTCGACAATATTAGCAgtgtgtttattataataataaactgaaaaacaGCTGTCACAGTAAGAAGTTCACAACAGTGAGCCGGCATGACTCTAAAGGTTGAAGGTGATCCAGCTTATGGCAGTGTGTCTGGAGCTCGTTTCACAGATGTGGAGGGCTCAGAGTCAGTCCCACTCCTCACTCCAggtcctccacctcctcctccagCCCGCCGGCGAGCATGGAAGCCACTGAGCAGAGAGGAGCTGGAGAGGTGCGCTGGAGGGCCGCAGTGGAGGAAATTTCGACGCCGACTGGTACTCTGCTTCTGGATCTGCTGGATGCTGCTGCTGGGCGCCGCGGTGTTAATAGTGATCCGGAGCCCACGGGCCACATCGCCTGTGCTGCACTGGTGGCAGAGGGATCTGATCTACCGCCTGCAGCCCATGCTCTTTTTGGATGCAGACAGACAGCAGGACAGCCGGATCAACAGAGTGTGTGAGCGTCTGCCGTATCTTAAGTCTGTGGGTGCTGGAGCAGTGATTCTGGAGGGACTGTTTGGGAACAGCAGCTCCTCAACAAACCTGACAGAGATCGACCAAAATCTTGGCACACTTCCACAACTCACACAGCTCATAACGGAAAGCCGGAAAGCAGGTGTGAGAGTGATCCTGGATCTTTGTGAGCTGGATCTATTTGAGCAAGAGTCAAACAATGACACTGCGGTTTGGTCCGGTGCGTCTGAGAGCATTCAGTACTCATTAAGGTATTGGCTGGATCACGGGGTATCAGGATTTGGGATCTGTGATACAGATGCAGCTTTCTCAGCAAAGACCCTAATGGAGTGGAACAAGCTGATGCAGGAGTTCAGCTCACAAGATGATGAAAGAATATTGATGGTGAGGCAAACAGGCAACACTCTTCCCGTGCTCAATGTGTCCAGCTTTGCTGGTTCACTAGTGGAGCTAGTAACAAAGTCCCTGATCCCTCCATCGCACCATCCGCTGTCTACCGCTGAGGTGGCGGAGGCCATAGAGGTCAGTCTGCAGATGCCACAGAGAGACTGGCCAAGCTGGACCGTTGGTGGAGGAGTACCAAGGGAGCTGAATAGAGCCATTCTACTTCTGATCATGACTTTACCTGGAACACCCATCATCAAATATGGAGATGAGCTCAGTTCAGCTCAGGGTTGGAACCGGCTCAATCAACCTCTAGCTCTTTTCCAATCCCTGAGTCAGTCTCGTGCCCGTGAGGAGGCTCTTCACTTTGGCAGATTCACCTTTCTATCCTTCAATACCAGCCTGCCATCCTCGTCTGGTCTCAATACTACAGACACACCTCTGTTAGCTTATCTGCGTTCCTGGGGCTGCGTTCACTTTCTTGTGCTGTTCAATTTGGGATCTGCACCTCACACCATGGACCCAGACTGGGCACCCAGTCTACCTGAAGGCGGAGTGTTTGTAACTAGCACAGGTCTTGACCGATTCGGCCCTGTGTCTCTAAATACAATCAAAATGCAACCACATGAAGCCATTGTCATCAAACTGTTCGAATCTGACAGCTCTTCCTGAGAAGAGATTACTGTGTAAAAGATCGTCTGGAGCCATATTTACAAAACATCTTAATGCTAAAAGTAGCTagaaaatcttaaaaataatggGCAGTCCTTAATTTAGGACTCATAACATTTTTTGCTTAAAGATTATTTCAGTTAAGACTATAGCTCCTAAAATCAGTGACGTGTTGGGGTAGCAAAGAGTCTCTAAGTCATAAGATCAAAATGCTAACTCTATTAAATTCCCTTTGCTGACAATCTGCTTTGGAGTTGTTTTTTTAACTTAGCCAACATTTGACCACAGTGAGCTTTTATTATGTCATCTCCTTAATCACAGAGTTATTCCcttactgtaataaatatattttcagattcattttgtttatttatttcaaactacACCACAAACTGAcaacaaaaatactttaaatatgtatatatacactaagggtgctttcacatctgtaattCGCTtaatttggtccagac

Function

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0006865 amino acid transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131127-371 Predicted to enable catalytic activity. Predicted to act upstream of or within amino acid transport and carbohydrate metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000154463

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016701 lncRNA upstream 307792 8762580 ~ 8765029 (+) True XLOC_008319
TCONS_00018889 lncRNA upstream 308708 8762474 ~ 8764113 (+) False XLOC_008319
TCONS_00016691 lncRNA upstream 1266901 7805779 ~ 7805920 (+) True XLOC_008312
TCONS_00018758 lncRNA upstream 1335290 7734489 ~ 7737531 (+) True XLOC_008311
TCONS_00018757 lncRNA upstream 1931939 7140410 ~ 7140882 (+) True XLOC_008308
TCONS_00016708 lncRNA downstream 115757 9205264 ~ 9211131 (+) True XLOC_008325
TCONS_00016715 lncRNA downstream 324646 9414153 ~ 9418151 (+) True XLOC_008329
TCONS_00016716 lncRNA downstream 362471 9451978 ~ 9457382 (+) True XLOC_008330
TCONS_00018759 lncRNA downstream 551180 9640687 ~ 9649456 (+) False XLOC_008331
TCONS_00018890 lncRNA downstream 558111 9647618 ~ 9648249 (+) True XLOC_008331
TCONS_00016704 mRNA upstream 3649 9053059 ~ 9069172 (+) True XLOC_008322
TCONS_00016702 mRNA upstream 272844 8767650 ~ 8799977 (+) True XLOC_008320
TCONS_00016698 mRNA upstream 672730 8394819 ~ 8400091 (+) True XLOC_008316
TCONS_00016697 mRNA upstream 689824 8335600 ~ 8382997 (+) True XLOC_008315
TCONS_00016696 mRNA upstream 691310 8335600 ~ 8381511 (+) False XLOC_008315
TCONS_00016706 mRNA downstream 27823 9117330 ~ 9184449 (+) False XLOC_008324
TCONS_00016707 mRNA downstream 31547 9121054 ~ 9184057 (+) True XLOC_008324
TCONS_00016709 mRNA downstream 205113 9294620 ~ 9297563 (+) False XLOC_008326
TCONS_00016710 mRNA downstream 205158 9294665 ~ 9304261 (+) False XLOC_008326
TCONS_00016711 mRNA downstream 207833 9297340 ~ 9315566 (+) False XLOC_008326
TCONS_00016703 other upstream 33657 9039050 ~ 9039164 (+) True XLOC_008321
TCONS_00016700 other upstream 340955 8731752 ~ 8731866 (+) True XLOC_008318
TCONS_00016699 other upstream 389884 8682822 ~ 8682937 (+) True XLOC_008317
TCONS_00016681 other upstream 2300701 6770586 ~ 6772120 (+) True XLOC_008302
TCONS_00016680 other upstream 2345739 6678521 ~ 6727082 (+) True XLOC_008301
TCONS_00016712 other downstream 214302 9303809 ~ 9311478 (+) True XLOC_008326
TCONS_00016719 other downstream 806351 9895858 ~ 9895986 (+) True XLOC_008335
TCONS_00016731 other downstream 2475884 11565391 ~ 11565509 (+) True XLOC_008343
TCONS_00016757 other downstream 4435367 13524874 ~ 13524988 (+) True XLOC_008360
TCONS_00016758 other downstream 4868215 13957722 ~ 13957850 (+) True XLOC_008361

Expression Profile

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