RNA id: TU261756


Basic Information

Item Value
RNA id TU261756
length 344
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G230622
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 2122321 ~ 2122664 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAAAGCTGGAGAATCTCACACAGCCAAAATGAGGATTGTCAGTAACGGTGTTCAGCCTTACATTGTTCAAACCGGAGTCGGACACTGATGGAGAGACTCAGGAAGAAGTTACAACTTTTACAATGAAACTGGACATTTCTGAATGGTTAGTGGATAAATTTATGTAGTTGCTGTGGAGTTGATTCAACTCATCGACTAGCATGTGCCGTCATGTTAATCTTTTGTGCAAATCCAGCGTTGAATTGAGCCTCGTTTGTGAAGCAGTCCGGAGTAAAATGACGGCATGGTAACAACACACTACTACAACAACTCTTCCTCTTCTCTAAAGCAGCCCAACATGGCCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261751 lncRNA upstream 6504 2115436 ~ 2115817 (+) True G230617
TU261737 lncRNA upstream 13646 2105720 ~ 2108675 (+) True G230606
TU261571 lncRNA upstream 39862 2082025 ~ 2082459 (+) True G230475
TU261598 lncRNA upstream 94706 2027154 ~ 2027615 (+) True CI01000054_02024879_02026284
TU261597 lncRNA upstream 95219 2026875 ~ 2027102 (+) False CI01000054_02024879_02026284
TU261758 lncRNA downstream 1703 2124367 ~ 2124737 (+) True G230624
TU261766 lncRNA downstream 9033 2131697 ~ 2132037 (+) True G230632
TU261768 lncRNA downstream 10580 2133244 ~ 2133556 (+) True G230634
TU261795 lncRNA downstream 56177 2178841 ~ 2179094 (+) True G230659
TU261806 lncRNA downstream 107166 2229830 ~ 2230020 (+) True G230666
CI01000054_02096054_02105211.mRNA mRNA upstream 17056 2096054 ~ 2105265 (+) True CI01000054_02096054_02105211
CI01000054_02024879_02026284.mRNA mRNA upstream 94742 2024879 ~ 2027579 (+) False CI01000054_02024879_02026284
CI01000054_01879983_01965668.mRNA mRNA upstream 156162 1879983 ~ 1966159 (+) True CI01000054_01879983_01965668
CI01000054_01871659_01875753.mRNA mRNA upstream 246111 1871548 ~ 1876210 (+) True CI01000054_01871659_01875753
CI01000054_01725792_01726688.mRNA mRNA upstream 395581 1725627 ~ 1726740 (+) False CI01000054_01725792_01726688
CI01000054_02195667_02196307.mRNA mRNA downstream 73003 2195667 ~ 2196853 (+) True CI01000054_02195667_02196307
CI01000054_02225261_02226820.mRNA mRNA downstream 101863 2224527 ~ 2227071 (+) True CI01000054_02225261_02226820
CI01000054_02239241_02261796.mRNA mRNA downstream 115660 2238324 ~ 2261858 (+) False CI01000054_02239241_02261796
CI01000054_02272856_02274337.mRNA mRNA downstream 148525 2271189 ~ 2274525 (+) False CI01000054_02272856_02274337
CI01000054_02289802_02330591.mRNA mRNA downstream 167138 2289802 ~ 2330981 (+) False CI01000054_02289802_02330591
TU261003 other upstream 395528 1725669 ~ 1726793 (+) True CI01000054_01725792_01726688
TU260765 other upstream 460756 1650960 ~ 1661565 (+) True CI01000054_01650242_01665628
TU260728 other upstream 540252 1578435 ~ 1582069 (+) True G229750
TU260932 other upstream 715191 1397080 ~ 1407130 (+) False G229936
TU260738 other upstream 848571 1266350 ~ 1273750 (+) True G229760
TU261855 other downstream 167167 2289831 ~ 2304382 (+) True CI01000054_02289802_02330591
TU261835 other downstream 955838 3078502 ~ 3087392 (+) True G230689
TU262576 other downstream 1785787 3908451 ~ 3913546 (+) True CI01000054_03848427_03914231
TU263121 other downstream 2284488 4407152 ~ 4450730 (+) True G231863
TU263797 other downstream 3500351 5623015 ~ 5623101 (+) True G232485

Expression Profile