RNA id: TU261758


Basic Information

Item Value
RNA id TU261758
length 371
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G230624
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 2124367 ~ 2124737 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGTTTTCATCAAAAACCTTAATTTCTTTTCGACTGAAGAAAGAAAGACATAAACATCTTGGATGACATGGGGGTGAGTGAATTATCAGGAAAATTTTATTTGAAAGTGAACTAATCCTTTAAGACTCACGGTTATGGTAAGGGGCGGGACATTTCCCAAACACGCTCGAAGCAGTTGACCAATCACAACACACTGGTCCAGCTGACCAATCAGAGCACATTGTGCTTTTCAGAAGGAGGGGCTTCACAGAGACAGGAACTAAACAGAGCGTTACTGACAGACTGGGAAGAGAGGAGCTGCAACAATGTCAAATAGGTGAAAAATAATGTGTTTTTGAACATTCAAGCATGAAAACCTATTTTAGTAGAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261756 lncRNA upstream 1703 2122321 ~ 2122664 (+) True G230622
TU261751 lncRNA upstream 8550 2115436 ~ 2115817 (+) True G230617
TU261737 lncRNA upstream 15692 2105720 ~ 2108675 (+) True G230606
TU261571 lncRNA upstream 41908 2082025 ~ 2082459 (+) True G230475
TU261598 lncRNA upstream 96752 2027154 ~ 2027615 (+) True CI01000054_02024879_02026284
TU261766 lncRNA downstream 6960 2131697 ~ 2132037 (+) True G230632
TU261768 lncRNA downstream 8507 2133244 ~ 2133556 (+) True G230634
TU261795 lncRNA downstream 54104 2178841 ~ 2179094 (+) True G230659
TU261806 lncRNA downstream 105093 2229830 ~ 2230020 (+) True G230666
TU261819 lncRNA downstream 148060 2272797 ~ 2274545 (+) True CI01000054_02272856_02274337
CI01000054_02096054_02105211.mRNA mRNA upstream 19102 2096054 ~ 2105265 (+) True CI01000054_02096054_02105211
CI01000054_02024879_02026284.mRNA mRNA upstream 96788 2024879 ~ 2027579 (+) False CI01000054_02024879_02026284
CI01000054_01879983_01965668.mRNA mRNA upstream 158208 1879983 ~ 1966159 (+) True CI01000054_01879983_01965668
CI01000054_01871659_01875753.mRNA mRNA upstream 248157 1871548 ~ 1876210 (+) True CI01000054_01871659_01875753
CI01000054_01725792_01726688.mRNA mRNA upstream 397627 1725627 ~ 1726740 (+) False CI01000054_01725792_01726688
CI01000054_02195667_02196307.mRNA mRNA downstream 70930 2195667 ~ 2196853 (+) True CI01000054_02195667_02196307
CI01000054_02225261_02226820.mRNA mRNA downstream 99790 2224527 ~ 2227071 (+) True CI01000054_02225261_02226820
CI01000054_02239241_02261796.mRNA mRNA downstream 113587 2238324 ~ 2261858 (+) False CI01000054_02239241_02261796
CI01000054_02272856_02274337.mRNA mRNA downstream 146452 2271189 ~ 2274525 (+) False CI01000054_02272856_02274337
CI01000054_02289802_02330591.mRNA mRNA downstream 165065 2289802 ~ 2330981 (+) False CI01000054_02289802_02330591
TU261003 other upstream 397574 1725669 ~ 1726793 (+) True CI01000054_01725792_01726688
TU260765 other upstream 462802 1650960 ~ 1661565 (+) True CI01000054_01650242_01665628
TU260728 other upstream 542298 1578435 ~ 1582069 (+) True G229750
TU260932 other upstream 717237 1397080 ~ 1407130 (+) False G229936
TU260738 other upstream 850617 1266350 ~ 1273750 (+) True G229760
TU261855 other downstream 165094 2289831 ~ 2304382 (+) True CI01000054_02289802_02330591
TU261835 other downstream 953765 3078502 ~ 3087392 (+) True G230689
TU262576 other downstream 1783714 3908451 ~ 3913546 (+) True CI01000054_03848427_03914231
TU263121 other downstream 2282415 4407152 ~ 4450730 (+) True G231863
TU263797 other downstream 3498278 5623015 ~ 5623101 (+) True G232485

Expression Profile