RNA id: TCONS_00016708


Basic Information

Item Value
RNA id TCONS_00016708
length 1713
lncRNA type lincRNA
GC content 0.49
exon number 9
gene id XLOC_008325
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 9205264 ~ 9211131 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGTGACAAACGAACGAGTAcagtgaacagtgatttaatgactTTAGCGACTTGTTTTGCGTCTCAAATGGAAAATAATAAGTCAACTTTGTTTTTTCATCGAGTTAAAAAGATCACGACTGACTTTGTCAACAATAATCATCAGAGTGACACGATGGCTTCTCCTACACCTTGTACCACGACGAGAAGCCCAACAGAAAACCCAGAGAAAAGGAGGAAAGGGAAAAAAGTCTCTGCTTTCTTTAAGAGAGTATGGAAGGCTGCAAAGCGCCCTTTCCTTAGCTGTGACCAGAGCAGAGTGGTTCCCTTTGAACCACAGTCAGATAATGACTATTTCGAGCACCTGCCTGTTCCAGGTCCCTCCAGGACCGTCGCAGCACATGCAGACCCTGAGCCGGTGTTGCTGCCAGGCCAGGTCTGTGAAGAACCTCAGCCGTTGAGTGTTCCTGGCCCCACCAGGATCAAGCAAACAGCAGATGTGCCGAATGCAGATCGGGCCCGTCCTGAGTCCTCAACGGCCCTCACAGGTTATGTTGACACTGAGCAGATGCGTCCGCCAGTCCAGGTCTGTGAAGATCCTCAGCCCttgagtgttccgggcccctCCAATATTAAGAAAATGACGGATGCAGATTCGGTCAGTCCTGAGTCGCCTCCGTCTGTTCAAGACCCCTCTAAAATTGATGGGACTGATGaaaaccccaagaaaggaaggaaagggaAAAGAGTCTCTGCTTTCTTTAAGAGAGCATGGAAGGCTGCAAAGCTCCCTTTCCTGCATTTTACGCCACAGCCTGAGCCAGAGTCAGAGCCAGACCTTGAGTCAGTATGTCTGCCAGGCCAGGGTCCTGAGGAGGCTTCTGGGCTCACTCGTGgaCTCGATCTGACTCAGTTTGAAGTCGGAGACCTGATTGGAGAAGGAGCTTTTGGCCAGGTGTATGTGGCATCTCACAAACGCAGTAAAAGAGTAAAGGTTGCCCTGAAGTGCATGGTGAAGAGTCAACAGGACCGTTATCTGGAAGTTGATGGTCATTCCACACCTGTGCTTGCAGAAGTGGCAATGATGCTTAGGTTGATGAAAGCTCCGCGATGTCCAAACATCATCAGATTACACAACTGGCTTGAGATTGAGGACAACTGTGTTCTCATTCTGGAGTACGCAGAGTCATGCCAGACCTTGCTTCAGTACATCAAAGACACAGCGGACATTGAGGAAAACCAAGCACGCCAGTTAATGCGTCAGTTGATCCGAGCTATAATGTTCTGCACTGAGCGTGGAGTTTTCCATGGGGATATACACACAGCGAACATCCTGGTGACTCTACCCTGACTAGAGCTCAAATTGATCGACTTTGGATGTGCTCAGCCAATTACCCAAAAGCCTTTCAATAAAAGTGACTATCGAGGAGCTGGACATGGCATGCCACCTGAGGCTTTGAGGTGTCGTGTATTCCATGCTAACCCGGCATACGTCTGGACAATAGGCATTATGCTATATGAAATAATGCATGGACGACTGGCCTTCAATAACAGACAGTCAATAATGTTTGGCGCAATTCAGATACACCCCAGGTTATCCACAGCATGCGTGGACCTGATTTCCCAATGTTTGATCCGTAATCCAGCTAAACGGCTACAGTTACACCAGGTAGAAGAGCACTGCTGGTTCAATCCAACGACCCCAAATCCTGTGAAGCAGTTATACAAGAGGAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000155856

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016701 lncRNA upstream 440235 8762580 ~ 8765029 (+) True XLOC_008319
TCONS_00018889 lncRNA upstream 441151 8762474 ~ 8764113 (+) False XLOC_008319
TCONS_00016691 lncRNA upstream 1399344 7805779 ~ 7805920 (+) True XLOC_008312
TCONS_00018758 lncRNA upstream 1467733 7734489 ~ 7737531 (+) True XLOC_008311
TCONS_00018757 lncRNA upstream 2064382 7140410 ~ 7140882 (+) True XLOC_008308
TCONS_00016715 lncRNA downstream 203022 9414153 ~ 9418151 (+) True XLOC_008329
TCONS_00016716 lncRNA downstream 240847 9451978 ~ 9457382 (+) True XLOC_008330
TCONS_00018759 lncRNA downstream 429556 9640687 ~ 9649456 (+) False XLOC_008331
TCONS_00018890 lncRNA downstream 436487 9647618 ~ 9648249 (+) True XLOC_008331
TCONS_00018760 lncRNA downstream 468890 9680021 ~ 9684915 (+) True XLOC_008332
TCONS_00016706 mRNA upstream 20815 9117330 ~ 9184449 (+) False XLOC_008324
TCONS_00016707 mRNA upstream 21207 9121054 ~ 9184057 (+) True XLOC_008324
TCONS_00016705 mRNA upstream 115757 9072821 ~ 9089507 (+) True XLOC_008323
TCONS_00016704 mRNA upstream 136092 9053059 ~ 9069172 (+) True XLOC_008322
TCONS_00016702 mRNA upstream 405287 8767650 ~ 8799977 (+) True XLOC_008320
TCONS_00016709 mRNA downstream 83489 9294620 ~ 9297563 (+) False XLOC_008326
TCONS_00016710 mRNA downstream 83534 9294665 ~ 9304261 (+) False XLOC_008326
TCONS_00016711 mRNA downstream 86209 9297340 ~ 9315566 (+) False XLOC_008326
TCONS_00016713 mRNA downstream 116121 9327252 ~ 9353696 (+) True XLOC_008327
TCONS_00016714 mRNA downstream 176219 9387350 ~ 9387790 (+) True XLOC_008328
TCONS_00016703 other upstream 166100 9039050 ~ 9039164 (+) True XLOC_008321
TCONS_00016700 other upstream 473398 8731752 ~ 8731866 (+) True XLOC_008318
TCONS_00016699 other upstream 522327 8682822 ~ 8682937 (+) True XLOC_008317
TCONS_00016681 other upstream 2433144 6770586 ~ 6772120 (+) True XLOC_008302
TCONS_00016680 other upstream 2478182 6678521 ~ 6727082 (+) True XLOC_008301
TCONS_00016712 other downstream 92678 9303809 ~ 9311478 (+) True XLOC_008326
TCONS_00016719 other downstream 684727 9895858 ~ 9895986 (+) True XLOC_008335
TCONS_00016731 other downstream 2354260 11565391 ~ 11565509 (+) True XLOC_008343
TCONS_00016757 other downstream 4313743 13524874 ~ 13524988 (+) True XLOC_008360
TCONS_00016758 other downstream 4746591 13957722 ~ 13957850 (+) True XLOC_008361

Expression Profile

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