RNA id: TU261930


Basic Information

Item Value
RNA id TU261930
length 238
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G230779
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 2482131 ~ 2482368 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGACTATTAATGGTGAGACTTTTGTTTTTGTAATCAGGCTCTCAAAAATTATATAAAAATTTTGATATAGATTTATCGGCCAATATATCGGTTATCGGCTTTCATATATAAAGAATTATCGGTTATCGGTATCAGCAAAAATTTTCAAAATGAGCGGTGCATCCTATCTACAACTACATAGAAAGTAGAAAATCATGGCTGTGATAGAGCTAACTTGTCTTTTTCTATGTGTTTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261929 lncRNA upstream 2398 2479398 ~ 2479733 (+) True G230778
TU261928 lncRNA upstream 4287 2477632 ~ 2477844 (+) True G230777
TU261927 lncRNA upstream 4602 2477294 ~ 2477529 (+) True G230776
TU261926 lncRNA upstream 5200 2476323 ~ 2476931 (+) True G230775
TU261924 lncRNA upstream 7313 2474602 ~ 2474818 (+) True G230773
TU261931 lncRNA downstream 4064 2486432 ~ 2486697 (+) True G230780
TU261932 lncRNA downstream 4655 2487023 ~ 2487256 (+) True G230781
TU261933 lncRNA downstream 10195 2492563 ~ 2492815 (+) True G230782
TU261934 lncRNA downstream 10528 2492896 ~ 2493128 (+) True G230783
TU261857 lncRNA downstream 63266 2545634 ~ 2546398 (+) True G230711
CI01000054_02417068_02430580.mRNA mRNA upstream 50815 2417068 ~ 2431316 (+) True CI01000054_02417068_02430580
CI01000054_02289802_02330591.mRNA mRNA upstream 151150 2289802 ~ 2330981 (+) False CI01000054_02289802_02330591
CI01000054_02272856_02274337.mRNA mRNA upstream 207606 2271189 ~ 2274525 (+) False CI01000054_02272856_02274337
CI01000054_02239241_02261796.mRNA mRNA upstream 220273 2238324 ~ 2261858 (+) False CI01000054_02239241_02261796
CI01000054_02225261_02226820.mRNA mRNA upstream 255060 2224527 ~ 2227071 (+) True CI01000054_02225261_02226820
CI01000054_02500503_02511195.mRNA mRNA downstream 18135 2500503 ~ 2511195 (+) True CI01000054_02500503_02511195
CI01000054_02564258_02570248.mRNA mRNA downstream 81324 2563692 ~ 2570405 (+) True CI01000054_02564258_02570248
CI01000054_02589793_02592201.mRNA mRNA downstream 107425 2589793 ~ 2592926 (+) True CI01000054_02589793_02592201
CI01000054_02613166_02614884.mRNA mRNA downstream 130690 2613058 ~ 2615458 (+) True CI01000054_02613166_02614884
CI01000054_02652696_02685815.mRNA mRNA downstream 170328 2652696 ~ 2685833 (+) True CI01000054_02652696_02685815
TU261855 other upstream 177749 2289831 ~ 2304382 (+) True CI01000054_02289802_02330591
TU261003 other upstream 755338 1725669 ~ 1726793 (+) True CI01000054_01725792_01726688
TU260765 other upstream 820566 1650960 ~ 1661565 (+) True CI01000054_01650242_01665628
TU260728 other upstream 900062 1578435 ~ 1582069 (+) True G229750
TU260932 other upstream 1075001 1397080 ~ 1407130 (+) False G229936
TU261835 other downstream 596134 3078502 ~ 3087392 (+) True G230689
TU262576 other downstream 1426083 3908451 ~ 3913546 (+) True CI01000054_03848427_03914231
TU263121 other downstream 1924784 4407152 ~ 4450730 (+) True G231863
TU263797 other downstream 3140647 5623015 ~ 5623101 (+) True G232485
TU263881 other downstream 3511292 5993660 ~ 6041863 (+) True G232558

Expression Profile