RNA id: TU261931


Basic Information

Item Value
RNA id TU261931
length 266
lncRNA type intronic
GC content 0.42
exon number 1
gene id G230780
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 2486432 ~ 2486697 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGGATTGACAAGCGTAGGGACAGACAGTGGTGGTGTGAGAAGTTACAGCAAGGAGAGTCAGAGAGGCATGTGAGGACAGAAGCTATATGTGTTCATTTCCCCACAGGCATGAGTGGGCCTTTGGATGTCACTTTACGGTTATCTAAAAAGCACTAACATAGGCAGGCAAAACAAGAAATGCTCTCACTATATTGGAGAAAATCAATAAAATGGCATTACTGGCCTCTATAGGTTCAATTATGACTATGCTTTCAAAGATGAACAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261930 lncRNA upstream 4064 2482131 ~ 2482368 (+) True G230779
TU261929 lncRNA upstream 6699 2479398 ~ 2479733 (+) True G230778
TU261928 lncRNA upstream 8588 2477632 ~ 2477844 (+) True G230777
TU261927 lncRNA upstream 8903 2477294 ~ 2477529 (+) True G230776
TU261926 lncRNA upstream 9501 2476323 ~ 2476931 (+) True G230775
TU261932 lncRNA downstream 326 2487023 ~ 2487256 (+) True G230781
TU261933 lncRNA downstream 5866 2492563 ~ 2492815 (+) True G230782
TU261934 lncRNA downstream 6199 2492896 ~ 2493128 (+) True G230783
TU261857 lncRNA downstream 58937 2545634 ~ 2546398 (+) True G230711
TU261949 lncRNA downstream 94599 2581296 ~ 2581522 (+) True G230798
CI01000054_02417068_02430580.mRNA mRNA upstream 55116 2417068 ~ 2431316 (+) True CI01000054_02417068_02430580
CI01000054_02289802_02330591.mRNA mRNA upstream 155451 2289802 ~ 2330981 (+) False CI01000054_02289802_02330591
CI01000054_02272856_02274337.mRNA mRNA upstream 211907 2271189 ~ 2274525 (+) False CI01000054_02272856_02274337
CI01000054_02239241_02261796.mRNA mRNA upstream 224574 2238324 ~ 2261858 (+) False CI01000054_02239241_02261796
CI01000054_02225261_02226820.mRNA mRNA upstream 259361 2224527 ~ 2227071 (+) True CI01000054_02225261_02226820
CI01000054_02500503_02511195.mRNA mRNA downstream 13806 2500503 ~ 2511195 (+) True CI01000054_02500503_02511195
CI01000054_02564258_02570248.mRNA mRNA downstream 76995 2563692 ~ 2570405 (+) True CI01000054_02564258_02570248
CI01000054_02589793_02592201.mRNA mRNA downstream 103096 2589793 ~ 2592926 (+) True CI01000054_02589793_02592201
CI01000054_02613166_02614884.mRNA mRNA downstream 126361 2613058 ~ 2615458 (+) True CI01000054_02613166_02614884
CI01000054_02652696_02685815.mRNA mRNA downstream 165999 2652696 ~ 2685833 (+) True CI01000054_02652696_02685815
TU261855 other upstream 182050 2289831 ~ 2304382 (+) True CI01000054_02289802_02330591
TU261003 other upstream 759639 1725669 ~ 1726793 (+) True CI01000054_01725792_01726688
TU260765 other upstream 824867 1650960 ~ 1661565 (+) True CI01000054_01650242_01665628
TU260728 other upstream 904363 1578435 ~ 1582069 (+) True G229750
TU260932 other upstream 1079302 1397080 ~ 1407130 (+) False G229936
TU261835 other downstream 591805 3078502 ~ 3087392 (+) True G230689
TU262576 other downstream 1421754 3908451 ~ 3913546 (+) True CI01000054_03848427_03914231
TU263121 other downstream 1920455 4407152 ~ 4450730 (+) True G231863
TU263797 other downstream 3136318 5623015 ~ 5623101 (+) True G232485
TU263881 other downstream 3506963 5993660 ~ 6041863 (+) True G232558

Expression Profile