RNA id: TU261934


Basic Information

Item Value
RNA id TU261934
length 233
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G230783
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 2492896 ~ 2493128 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTAAATTATGCCTGCTCTGACCCACCTCAACCCCTGGTATCAAAGTATACAGTTAAAATTGCTGTGTAAATGCAATTATGCCACCTTTAAACGTCTGTGTAAAGACACCTAAATGACATTTTGGAAGTGCTTCTGTGCCACCTTTGCAGTGTAAATTTGGCATATTTATATTTACGGTAGTGATGTATAATTTAATTTGTTAACTTCTTATTTGTTTCATTTTTTTATTTTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261933 lncRNA upstream 81 2492563 ~ 2492815 (+) True G230782
TU261932 lncRNA upstream 5640 2487023 ~ 2487256 (+) True G230781
TU261931 lncRNA upstream 6199 2486432 ~ 2486697 (+) True G230780
TU261930 lncRNA upstream 10528 2482131 ~ 2482368 (+) True G230779
TU261929 lncRNA upstream 13163 2479398 ~ 2479733 (+) True G230778
TU261857 lncRNA downstream 52506 2545634 ~ 2546398 (+) True G230711
TU261949 lncRNA downstream 88168 2581296 ~ 2581522 (+) True G230798
TU261856 lncRNA downstream 89283 2582411 ~ 2583773 (+) True G230710
TU261953 lncRNA downstream 93787 2586915 ~ 2587138 (+) True G230802
TU261963 lncRNA downstream 118268 2611396 ~ 2612378 (+) True G230812
CI01000054_02417068_02430580.mRNA mRNA upstream 61580 2417068 ~ 2431316 (+) True CI01000054_02417068_02430580
CI01000054_02289802_02330591.mRNA mRNA upstream 161915 2289802 ~ 2330981 (+) False CI01000054_02289802_02330591
CI01000054_02272856_02274337.mRNA mRNA upstream 218371 2271189 ~ 2274525 (+) False CI01000054_02272856_02274337
CI01000054_02239241_02261796.mRNA mRNA upstream 231038 2238324 ~ 2261858 (+) False CI01000054_02239241_02261796
CI01000054_02225261_02226820.mRNA mRNA upstream 265825 2224527 ~ 2227071 (+) True CI01000054_02225261_02226820
CI01000054_02500503_02511195.mRNA mRNA downstream 7375 2500503 ~ 2511195 (+) True CI01000054_02500503_02511195
CI01000054_02564258_02570248.mRNA mRNA downstream 70564 2563692 ~ 2570405 (+) True CI01000054_02564258_02570248
CI01000054_02589793_02592201.mRNA mRNA downstream 96665 2589793 ~ 2592926 (+) True CI01000054_02589793_02592201
CI01000054_02613166_02614884.mRNA mRNA downstream 119930 2613058 ~ 2615458 (+) True CI01000054_02613166_02614884
CI01000054_02652696_02685815.mRNA mRNA downstream 159568 2652696 ~ 2685833 (+) True CI01000054_02652696_02685815
TU261855 other upstream 188514 2289831 ~ 2304382 (+) True CI01000054_02289802_02330591
TU261003 other upstream 766103 1725669 ~ 1726793 (+) True CI01000054_01725792_01726688
TU260765 other upstream 831331 1650960 ~ 1661565 (+) True CI01000054_01650242_01665628
TU260728 other upstream 910827 1578435 ~ 1582069 (+) True G229750
TU260932 other upstream 1085766 1397080 ~ 1407130 (+) False G229936
TU261835 other downstream 585374 3078502 ~ 3087392 (+) True G230689
TU262576 other downstream 1415323 3908451 ~ 3913546 (+) True CI01000054_03848427_03914231
TU263121 other downstream 1914024 4407152 ~ 4450730 (+) True G231863
TU263797 other downstream 3129887 5623015 ~ 5623101 (+) True G232485
TU263881 other downstream 3500532 5993660 ~ 6041863 (+) True G232558

Expression Profile