RNA id: TU261953



Basic Information


Item Value
RNA id TU261953
length 224
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G230802
representative True

Chromosome Information


Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 2586915 ~ 2587138 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATCGAGCCCTGCTTATAATAGAGCCAAGAGCTCTGAAAATAACACGGCCCAGATTCATTTGTAATTGAATAGAAGAAGATGTGAATATTAGAGCATGATTTCTTTTCTTTAATGTTTAATGTCAACCCAAAAACGGAGTGACAGAGCACTTTCCTCCACTGGCGTCTCTACTTCTGACGGGTTTCTTTCTTATTTCTGAGTTCCCTGAGTTTCTGAGAGAAAAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU261856 lncRNA upstream 3142 2582411 ~ 2583773 (+) True G230710
TU261949 lncRNA upstream 5393 2581296 ~ 2581522 (+) True G230798
TU261857 lncRNA upstream 40517 2545634 ~ 2546398 (+) True G230711
TU261934 lncRNA upstream 93787 2492896 ~ 2493128 (+) True G230783
TU261933 lncRNA upstream 94100 2492563 ~ 2492815 (+) True G230782
TU261963 lncRNA downstream 24258 2611396 ~ 2612378 (+) True G230812
TU261853 lncRNA downstream 46153 2633291 ~ 2689215 (+) True G230707
TU261968 lncRNA downstream 109375 2696513 ~ 2697025 (+) True G230816
TU261969 lncRNA downstream 110352 2697490 ~ 2697760 (+) True G230817
TU261980 lncRNA downstream 195798 2782936 ~ 2783757 (+) True G230828
CI01000054_02564258_02570248.mRNA mRNA upstream 16510 2563692 ~ 2570405 (+) True CI01000054_02564258_02570248
CI01000054_02500503_02511195.mRNA mRNA upstream 75720 2500503 ~ 2511195 (+) True CI01000054_02500503_02511195
CI01000054_02417068_02430580.mRNA mRNA upstream 155599 2417068 ~ 2431316 (+) True CI01000054_02417068_02430580
CI01000054_02289802_02330591.mRNA mRNA upstream 255934 2289802 ~ 2330981 (+) False CI01000054_02289802_02330591
CI01000054_02272856_02274337.mRNA mRNA upstream 312390 2271189 ~ 2274525 (+) False CI01000054_02272856_02274337
CI01000054_02589793_02592201.mRNA mRNA downstream 2655 2589793 ~ 2592926 (+) True CI01000054_02589793_02592201
CI01000054_02613166_02614884.mRNA mRNA downstream 25920 2613058 ~ 2615458 (+) True CI01000054_02613166_02614884
CI01000054_02652696_02685815.mRNA mRNA downstream 65558 2652696 ~ 2685833 (+) True CI01000054_02652696_02685815
CI01000054_02824071_02824355.mRNA mRNA downstream 236887 2824025 ~ 2824642 (+) True CI01000054_02824071_02824355
CI01000054_02951289_02967370.mRNA mRNA downstream 363777 2950915 ~ 2967660 (+) True CI01000054_02951289_02967370
TU261855 other upstream 282533 2289831 ~ 2304382 (+) True CI01000054_02289802_02330591
TU261003 other upstream 860122 1725669 ~ 1726793 (+) True CI01000054_01725792_01726688
TU260765 other upstream 925350 1650960 ~ 1661565 (+) True CI01000054_01650242_01665628
TU260728 other upstream 1004846 1578435 ~ 1582069 (+) True G229750
TU260932 other upstream 1179785 1397080 ~ 1407130 (+) False G229936
TU261835 other downstream 491364 3078502 ~ 3087392 (+) True G230689
TU262576 other downstream 1321313 3908451 ~ 3913546 (+) True CI01000054_03848427_03914231
TU263121 other downstream 1820014 4407152 ~ 4450730 (+) True G231863
TU263797 other downstream 3035877 5623015 ~ 5623101 (+) True G232485
TU263881 other downstream 3406522 5993660 ~ 6041863 (+) True G232558

Expression Profile